FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 411
            L+ A+D  I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G    +V   P+  T  +  VEM  + L E + GDN+G  ++ +  +DL+RG V +N
Sbjct:  194 LMAAVDEYIPTPQRATDKPFLMPVEDVFSIAGRGTVATGRVERGKIKVGEEVEIVGIRPTQKTV-ITGVEMFRKLLDEGMAGDNIGALLRGLKREDLERGQVLAN 297          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SALAI (Elongation factor Tu OS=Salinispora arenicola (strain CNS-205) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+ A+D +I +P+R ++KP  +P++DV+ I G GTV  GR E G+LKP     +V        T    +EM  + L EA  G+NVG  ++ V  +D++RG V    K   A     F + V I++   + G  + P    +      + +++   +    G E+
Sbjct:  194 LMTAVDTSIPQPERETEKPFLMPIEDVFTITGRGTVVTGRAERGILKPNEEVELVGIREKSTKTTCTGIEMFRKLLDEARAGENVGLLLRGVKREDVERGMVV--IKPGTATPHTEFEATVYILSK--EEGGRHTPFFQNYRPQFYFRTTDVTGVVTLPEGTEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  106 TLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            T+ + +D I+E    P+R +DK   + ++DV+ I G GTV  GR+E G +K G  +     GL    TT +  +EM  ++L+EAL GDNVG  V+ +   D++RG V
Sbjct:  198 TIFELMDKIDEYIPTPERETDKSFLMAVEDVFSITGRGTVATGRIERGQVKVGDTIEI--IGLRETRTTTITGLEMFQKSLEEALAGDNVGILVRGIQKTDIERGMV 302          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PSYIN (Elongation factor Tu OS=Psychromonas ingrahamii (strain 37) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L DALD  I  P+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     GL   VK+    VEM  + L E   G+NVG  ++     D++RG V   +K    +    F  +V I++     G  + P    +      + +++   ++   G E+
Sbjct:  192 LADALDTYIPLPERDIDKPFILPIEDVFSIAGRGTVVTGRVERGIIKVGQEVEI--IGLRPTVKTTCTGVEMFRKLLDEGRAGENVGILLRGTKRDDVERGQVL--AKPGSIKPHTKFEGEVYILSK--DEGGRHTPFFKGYRPQFFFRTTDITGAVELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA6 (Elongation factor Tu OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLTTE-VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++  G  V   G    TT  V  VEM  + L E   G+N+G  ++    +D++RG V   +K         F ++V +++     G  + P    +      + +++   ++   G E+
Sbjct:  192 LAEALDSYIPEPERDIDKPFLLPIEDVFSISGRGTVVTGRVERGIVNTGDAVEIVGMKDTTTSTVTGVEMFRKLLDEGRAGENIGALLRGTKREDVERGQVL--AKPGSINPHTQFEAEVYVLSK--DEGGRHTPFFKGYRPQFYFRTTDVTGAVELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   40 ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG--LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            I     +  I+R  N    K   L+DA+D  I  P+R  +K   + ++DV+ I G GTV  GR+E GV+K G  V     G   TT +  +EM  + L E   GDNVG  ++ V  +D++ G V   S+        NF S+V ++
Sbjct:  179 IEAISSNPAIKRGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIEAGMVL--SEPGTITPHTNFESEVYVL 322          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_METCA (Elongation factor Tu OS=Methylococcus capsulatus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHI 531
            L+ ALD+ I EP+R  D+P  +P++DV+ I G GTV  GRVE G++K G    +V   P+  TT    VEM  + L +   GDN+G  ++    +D++RG V   +K        +F +++ +++           NGY P     T+ +
Sbjct:  194 LVQALDDYIPEPERAIDRPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRPTAKTT-CTGVEMFRKLLDQGQAGDNIGVLLRGTKREDVERGQVL--AKPGSITPHTHFEAEIYVLSKEEGGRHTPFFNGYRPQFYFRTTDV 340          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            LLD +D  I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      + + V  VEM H+ L     GDNVG  ++ V+   ++RG V   ++    +    F  +V +M    + G  + P    +        +++   I+   G E+
Sbjct:  193 LLDVVDEYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKIGDEVEIVGLKEDVIKSTVTGVEMFHKTLDLGEAGDNVGILLRGVSHDQIERGQVL--AEPGSIQTHKQFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_HUMAN (Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFS---ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            LLDA+D  I  P R  +KP  LP++ VY + G GTV  G +E G+LK G    +      + T V  +EM H++L+ A  GDN+G  V+ +  +DL+RG V    K    +      +QV I++   + G  + P +   +  + V FS   ++  +I     KEL    + LK        +I  QPM++E
Sbjct:  239 LLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVM--VKPGSIKPHQKVEAQVYILSK--EEGGRHKPFV---SHFMPVMFSLTWDMACRIILPPEKELAMPGEDLK------FNLILRQPMILE 417          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DEISP (Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN------HPGQIGNGYAPVLDCHTSHI 531
            LLDA+D+ I  P+R +DK   +P++DV+ I G GTV  GRVE GV+K    V     GL     T V  +EMH + L   + GDNVG  ++ VA  D++RG V   +K    +    F + V +++      H    G GY P     T+ +
Sbjct:  203 LLDAVDSYIPTPERATDKTFLMPVEDVFTITGRGTVATGRVERGVVKVQDEVEI--IGLRDTKKTTVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVL--AKPGSIKPHTKFEASVYVLSKDEGGRHSAFFG-GYRPQFYFRTTDV 349          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STIAU4.105e-1240.00Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_SALAI4.105e-1229.27Elongation factor Tu OS=Salinispora arenicola (str... [more]
EFTU_RHDSA4.105e-1238.32Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_PSYIN4.105e-1232.12Elongation factor Tu OS=Psychromonas ingrahamii (s... [more]
EFTU_PSEA64.105e-1230.67Elongation factor Tu OS=Pseudoalteromonas atlantic... [more]
EFTU_ODOSI4.105e-1233.56Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_METCA4.105e-1232.00Elongation factor Tu OS=Methylococcus capsulatus G... [more]
EFTU_LACF34.105e-1229.88Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_HUMAN4.105e-1231.77Elongation factor Tu, mitochondrial OS=Homo sapien... [more]
EFTU_DEISP4.105e-1235.53Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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