FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BREBN (Elongation factor Tu OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 42/125 (33.60%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 471
            L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G++K G    ++        T V  VEM  + L +A  GDN+G  ++ V   D++RG     +K    +    F ++V +++
Sbjct:  193 LMEAVDSYIPTPERATDKPFLMPVEDVFTITGRGTVATGRVERGIVKVGDQVEIIGLAEETKNTTVTGVEMFRKLLDQAQAGDNIGALLRGVDRNDIERG--QCLAKPGSVKPYTKFKAEVYVLS 315          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BORHD (Elongation factor Tu OS=Borrelia hermsii (strain DAH) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/144 (34.03%), Postives = 71/144 (49.31%), Query Frame = 1
Query:   10 INPEKVPFVPISGFEGDNMIERSTNLDWYKGPT----------LLDALDNINE-PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            +  E +  V   GF GD  I + +       P           LL+ +D+  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V       T  T V  VEM  + L++   GDNVG  ++ V  KD++RG V
Sbjct:  150 VEVEVLELVEKYGFPGDTPIVKGSAFGAMSNPDDPEATKCIKELLETMDSYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGIIKVGQEVEIVGIRETRKTTVTGVEMFQKILEQGEAGDNVGLLLRGVDKKDVERGQV 293          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ANOFW (Elongation factor Tu OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G+LK G    ++        T V  VEM  + L +A  GDN+G  ++ V+  +++RG V   +K         F +QV ++    + G  + P    +      + +++   I    G E+
Sbjct:  192 LMNAVDEYIPTPQREVDKPFMMPVEDVFSITGRGTVATGRVERGILKVGDQVEIIGLSEEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVQRGQVL--AKPGTITPHTKFKAQVYVLTK--EEGGRHTPFFSNYRPQFYFRTTDVTGIIQLPEGVEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_AERS4 (Elongation factor Tu OS=Aeromonas salmonicida (strain A449) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 1
Query:   40 ISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            +   EGD      +IE + +LD Y           I EP+R  D P  +P++DV+ I G GTV  GRVE G++K G  V        ++T    VEM  + L E   G+N+G  ++ V  +D++RG V   +K    +    F S+V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  176 LKALEGDAAWEEKIIELANHLDTY-----------IPEPERAIDLPFLMPIEDVFSIAGRGTVVTGRVERGIVKVGETVEIVGIKDTVSTTCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQVL--AKPGSIKPHTKFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ACTPJ (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 52/179 (29.05%), Postives = 87/179 (48.60%), Query Frame = 1
Query:   58 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ACTP2 (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 52/179 (29.05%), Postives = 87/179 (48.60%), Query Frame = 1
Query:   58 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHI--AVKFSELVTKI 564
            +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++            NGY P     T+ +   VK  E V  +
Sbjct:  166 DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEMV 357          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            L+ A+D  I EP+R  DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   +K+   QP+ +E
Sbjct:  194 LMKAVDEAIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMKVELIQPVAME 373          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 57/194 (29.38%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHI--AVKFSELVTKI 564
            +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G    +V        T V  VEM  + L   + GDNVG  ++ V  K+++RG V   +K    +   +F+++V ++            NGY P     T+ +   VK  E V  +
Sbjct:  166 DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVGDEVEIVGLQDKPRKTVVTGVEMFRKILDVGVAGDNVGCLLRGVDRKEIERGQVL--AKPGSIKPHKSFSAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVVKLPEGVEMV 357          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: CYSN_SALNS (Sulfate adenylyltransferase subunit 1 OS=Salmonella newport (strain SL254) GN=cysN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 57/216 (26.39%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   25 VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG--FVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            + FVP+S  EGDN+  +S N+ W+ GPTLL+ L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +       +EA  G+ +   + +    D+ RG   +A+N    PAR AA     V +   P   G  Y   L    +   ++       I+  + +++E  P    NG  G+V+M   +P+ ++
Sbjct:  200 IRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDI--DISRGDLLLAANETLAPARHAA--IDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLP---LNG-IGLVEMTFDEPLALD 407          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BREBN4.105e-1233.60Elongation factor Tu OS=Brevibacillus brevis (stra... [more]
EFTU_BORHD4.105e-1234.03Elongation factor Tu OS=Borrelia hermsii (strain D... [more]
EFTU_ANOFW4.105e-1229.88Elongation factor Tu OS=Anoxybacillus flavithermus... [more]
EFTU_AERS44.105e-1227.89Elongation factor Tu OS=Aeromonas salmonicida (str... [more]
EFTU_ACTPJ4.105e-1229.05Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_ACTP24.105e-1229.05Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU2_PELTS4.105e-1229.38Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU1_STRCO4.105e-1228.42Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_PELTS4.105e-1229.38Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
CYSN_SALNS4.105e-1226.39Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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