FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:621..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_TAXOC (Elongation factor Tu OS=Taxeobacter ocellatus GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 52/193 (26.94%), Postives = 93/193 (48.19%), Query Frame = 1
Query:   49 FEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL---KPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            F+GDN+ + + + L    G          L+D++DN I  P R +D+P  +P++DV+ I G GTV  GR+E GV+   +P  ++  G   L + V  VEM  + L     GDNVG  ++ +  + ++RG V    K         F ++V +++   + G  + P  + +      + +++   I    G E+
Sbjct:  163 FDGDNIPVVQGSALGGLNGDAKWVGTIEQLMDSVDNWIPIPPRLTDQPFLMPVEDVFSITGRGTVATGRIERGVINSGEPVEILGMGAENLKSTVTGVEMFRKILDRGEAGDNVGLLLRGIEKEAIRRGMVI--CKPGSVTPHKKFKAEVYVLSK--EEGGRHTPFFNNYRPQFYFRTTDVTGIISLAEGVEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRCJ (Elongation factor Tu OS=Streptomyces cinnamoneus GN=tuf PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG 396
            L+ A+D NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG
Sbjct:  194 LMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERG 293          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_PROMM (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9313) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 EKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V +SG +  +   E    +D      L++A+D +I EP+R  +KP  + ++DV+ I G GTV  GR+E G +K G    +V    S  TT V  VEM  + L E L GDN G  ++ +  +D++RG V
Sbjct:  166 DDIPIVQVSGLKAIEGEAEWEAKID-----ELMEAVDASIPEPEREIEKPFLMAVEDVFSITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTT-VTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  106 TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            +L+ A+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L +   GDN+G  ++ V  +D++RG V
Sbjct:  188 SLMAAVDDYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREDVERGQV 289          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGI (Elongation factor Tu OS=Mycobacterium gilvum (strain PYR-GCK) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/135 (36.30%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   19 EKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            E  P V +S     EGD    +S          L+ A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   P+   T V  VEM  + L +   GDNVG  V+ +  +D++RG V
Sbjct:  167 EDAPVVKVSALKALEGDEKWVKSVQ-------ELMAAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPTVTKTTVTGVEMFRKLLDQGQAGDNVGLLVRGIKREDVERGQV 294          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    +V       +T V  VEM  + L +A  GDN+G  ++ V+  +++RG V   +K         F +QV ++
Sbjct:  192 LMNAVDEYIPTPQREIDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDAVEIVGLADEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVL--AKPGSITPHTKFKAQVYVL 313          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_FLAFE (Elongation factor Tu OS=Flavobacterium ferrugineum GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   46 GFEGDN--MIERSTN------LDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            GF+GDN  +I+ S          W K    L+DA+D+ I  P RP D P  + ++DV+ I G GTV  GR+E G +K   P  +V    S L + V  VEM  + L E   GDN G  ++ V    ++RG V    K        +F  +V +++     G  + P  + +      + +++  +++  +G E+
Sbjct:  162 GFDGDNTPIIKGSATGALAGEEKWVKEIENLMDAVDSYIPLPPRPVDLPFLMSVEDVFSITGRGTVATGRIERGRIKVGEPVEIVGLQESPLNSTVTGVEMFRKLLDEGEAGDNAGLLLRGVEKTQIRRGMVI--VKPGSITPHTDFKGEVYVLSK--DEGGRHTPFFNKYRPQFYFRTTDVTGEVELNAGTEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_EUBE2 (Elongation factor Tu OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   46 GFEGDN--MIERST-------NLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSV-----EMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 468
            GF GD+  +I+ S        N +W  G  +L+ +  I+E    P+R +DKP  +P++DV+ I G GTV  GRVE GVL     V     G+  +++ V     EM  + L EA PGDN+G  ++ V   +++RG V    K         FT+QV ++
Sbjct:  163 GFPGDDTPIIQGSALKALEDPNSEW--GDKILELMHTIDEYVPDPERDTDKPFLMPVEDVFSITGRGTVATGRVERGVLHVNEEVEI--VGIHEDIRKVVVTGIEMFRKLLDEAQPGDNIGALLRGVQRDEIQRGQVL--CKPGSITPHHKFTAQVYVL 315          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRW (Elongation factor Tu OS=Ehrlichia ruminantium (strain Welgevonden) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++AL+ I+ P R  DKP  + ++DV+ I G GTV  GR+E GV+K G  +     GL    +T    VEM H+AL     GDN G  ++ +  +D++RG V   S          F ++V ++    + G  + P    +     V+ +++   I    G E+
Sbjct:  194 LMNALEKIDLPIREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIKVGDKIDI--VGLRDIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVL--SAPGQIHSYKGFKAEVYVLKK--EEGGRHTPFFSNYQPQFYVRTTDVTGNIKLPDGVEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRG (Elongation factor Tu OS=Ehrlichia ruminantium (strain Gardel) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++AL+ I+ P R  DKP  + ++DV+ I G GTV  GR+E GV+K G  +     GL    +T    VEM H+AL     GDN G  ++ +  +D++RG V   S          F ++V ++    + G  + P    +     V+ +++   I    G E+
Sbjct:  194 LMNALEKIDLPIREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIKVGDKIDI--VGLRDIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVL--SAPGQIHSYKGFKAEVYVLKK--EEGGRHTPFFSNYQPQFYVRTTDVTGNIKLPDGVEM 351          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_TAXOC5.362e-1226.94Elongation factor Tu OS=Taxeobacter ocellatus GN=t... [more]
EFTU_STRCJ5.362e-1239.00Elongation factor Tu OS=Streptomyces cinnamoneus G... [more]
EFTU_PROMM5.362e-1235.34Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_OCHA45.362e-1240.20Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_MYCGI5.362e-1236.30Elongation factor Tu OS=Mycobacterium gilvum (stra... [more]
EFTU_GEOSW5.362e-1236.29Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU_FLAFE5.362e-1228.87Elongation factor Tu OS=Flavobacterium ferrugineum... [more]
EFTU_EUBE25.362e-1233.96Elongation factor Tu OS=Eubacterium eligens (strai... [more]
EFTU_EHRRW5.362e-1229.88Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]
EFTU_EHRRG5.362e-1229.88Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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