FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++AL+ I+ P R  DKP  + ++DV+ I G GTV  GR+E GV++ G  +     GL    +T    VEM H+AL     GDN G  ++ +  +D++RG V   S          F ++V I+    + G  + P    +     V+ +++   I    G E+
Sbjct:  194 LMNALEKISLPTREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVGDKIEI--VGLRDIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVL--SAPGQIHSYKKFKAEVYILKK--EEGGRHTPFFSNYQPQFYVRTTDVTGSIKLPEGVEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKD-DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            LL A D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  V     G+    KS    VEM  + L +   GDN+G  ++ V   D++RG V +  K   P R+   F ++V +++   + G  + P    +      + +++   I    G E+
Sbjct:  195 LLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEI--VGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKSITPHRK---FKAEVYVLSK--EEGGRHTPFFSGYRPQFYFRTTDITGVITLEEGVEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKD-DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            LL A D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G  V     G+    KS    VEM  + L +   GDN+G  ++ V   D++RG V +  K   P R+   F ++V +++   + G  + P    +      + +++   I    G E+
Sbjct:  195 LLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEI--VGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKSITPHRK---FKAEVYVLSK--EEGGRHTPFFSGYRPQFYFRTTDITGVITLEEGVEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 52/164 (31.71%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            LLDA D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT    VEM  + L +   GDN+G  ++     D++RG V +  K     +   F ++V +++   + G  + P    +      + +++   I    G E+
Sbjct:  195 LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEIVGIKPTVKTT-CTGVEMFRKLLDQGEAGDNIGALLRGTKRDDVERGQVLAAPKSITPHK--KFKAEVYVLSK--EEGGRHTPFFTGYRPQFYFRTTDITGVISLPEGVEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 50/190 (26.32%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            L++ +D  I  PKR ++KP  + +++V  I G GTV  GRVE G+++ G  V       T E  +  +EM H+ L++++ GDNVG  ++ +  ++++RG V   +K        +F +QV I+    + G  +      +     V+ +++   I    GK    + + +  GD   +++   +P+ +ET
Sbjct:  201 LMETVDEYIPTPKRDTEKPFLMAIENVVSITGRGTVATGRVERGMIEVGQTVELVGLKNTKEAIITGLEMFHKTLEKSVAGDNVGILLRRIQKEEIQRGMVL--AKPSSILPHQHFKAQVYILKK--EEGGRHTSFFAGYRPQFYVRTTDVTGHIKTFQGKIDNTQIQMVMPGDRIQMEVELIRPIAIET 386          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CHLFF (Elongation factor Tu OS=Chlamydophila felis (strain Fe/C-56) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  124 DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            DNI  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:  198 DNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDKVQIVGLRDTRESIVTGVEMFRKELPEGQAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAB (Elongation factor Tu OS=Chlamydophila abortus GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  124 DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            DNI  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:  198 DNIPTPEREVDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDKVQIVGLRDTRETIVTGVEMFRKELPEGQAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_BACTN (Elongation factor Tu OS=Bacteroides thetaiotaomicron GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+DA+DN I  P R  DKP  +P++DV+ I G GTV  GR+E+G++  G  V     GL  + KS    VEM  + L +   GDNVG  ++ V   ++KRG V    K    +  + F ++V I+    + G  + P  + +     ++  +   +I    G E+
Sbjct:  192 LMDAVDNWIPLPPRDVDKPFLMPVEDVFSITGRGTVATGRIESGIIHVGDEVEI--LGLGEDKKSVVTGVEMFRKLLDQGEAGDNVGLLLRGVDKNEIKRGMVL--CKPGQIKPHSRFKAEVYILKK--EEGGRHTPFHNKYRPQFYLRTMDCTGEITLPEGTEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            + +P V  SG +  +++ ++      + P       L+DA+D+ I +P+R  DKP  + ++DV+ I G GTV  GR+E G +K G VV       T  T V  +EM  ++L E + GDN G  ++ +   D++RG V
Sbjct:  166 DDIPIVRGSGLQALDVMTKNPKTQRGENPWVDKIYELMDAVDSYIPDPERDIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGDVVELVGIRDTRNTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKTDIERGMV 302          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   46 GFEGDNM-IERSTNLDWYKGPT--------LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            GF GD++ + R + L    G          L++A+D NI  P R  DKP  +P++D++ I G GTV  GR+E G +K G  V       T  T V  VEM  + L E L GDN G  ++ +   D++RG V
Sbjct:  163 GFPGDDLPVVRGSALGALNGEAQWEAKIDELMEAVDKNIPLPARDIDKPFLMPIEDIFSISGRGTVVTGRIERGKVKVGEEVEIVGFRETRKTVVTGVEMFKKQLDEGLAGDNAGLLLRGIGKDDVERGMV 293          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EHRCR5.362e-1229.88Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]
EFTU_DESVV5.362e-1232.53Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH5.362e-1232.53Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_DESDA5.362e-1231.71Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CODFR5.362e-1226.32Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU_CHLFF5.362e-1242.11Elongation factor Tu OS=Chlamydophila felis (strai... [more]
EFTU_CHLAB5.362e-1242.11Elongation factor Tu OS=Chlamydophila abortus GN=t... [more]
EFTU_BACTN5.362e-1231.52Elongation factor Tu OS=Bacteroides thetaiotaomicr... [more]
EFTU_ANAVT5.362e-1232.85Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_ACIBL5.362e-1236.64Elongation factor Tu OS=Acidobacteria bacterium (s... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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