FC930910

Overview
NameFC930910
Unique NameFC930910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2473 contig Ccv1_Contig2473:36..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DROGR (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila grimshawi GN=GH15308 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 83/207 (40.10%), Postives = 131/207 (63.29%), Query Frame = 2
Query:   50 DYEDAPAD-YDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVL--HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEI-ALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            D+ +   D YD  A     + DL Y+ N+    +P++VK F+++  + I+E N+Y+I  MYE +F  +SD  F  + WP    V   VDND VF +LY+E+++RH++AR+   P L QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K++ EI  L   +   W++  +LN L +LV+ S I
Sbjct:    6 DFNNTQQDFYDDYAHTGDPALDLEYERNYYANRMPENVKYFLINFCQAIKEGNLYDIQNMYENTFPQISDHHFDKSAWPEEQEVGAIVDNDKVFLILYKELYYRHIHARIPGGPKLDQRINSFFNYCDFFNLIISAQNPVLLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQDEIQQLCVNHSNVWSILCILNVLHSLVDISNI 212          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DROMO (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila mojavensis GN=GI12903 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.679e-39
Identity = 81/198 (40.91%), Postives = 126/198 (63.64%), Query Frame = 2
Query:   74 YDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVL--HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEI-ALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            YD  A       D+ Y+  F    +PD+VK F+++  + I+E N+Y+I  MYE +F  +SD  F  + WP    V   VDND VF +LY+E+++RH++AR+   P L+QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K++ EI  L   +   W++  +LN L +LV+ S I
Sbjct:   13 YDDYAHTGDPQLDMEYERTFYANRMPDNVKFFLMNFCQAIKEGNLYDIQNMYENTFPQISDHHFDKSAWPEEQEVGAIVDNDKVFLILYKELYYRHIHARIPGGPKLEQRINSFFNYCDFFNLIISSQNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQDEIQQLCVNHSNVWSILCILNVLHSLVDISNI 210          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_CRYNE (Eukaryotic translation initiation factor 3 subunit L OS=Cryptococcus neoformans GN=CNL05160 PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 77/171 (45.03%), Postives = 110/171 (64.33%), Query Frame = 2
Query:  134 VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            +P+ VK F+V  ++ I E ++  I  MYE+ +  L+   + +  WP  + +A  V ND VF  LYRE++FRH+YARL PT+  R  S++N C LF  +L+  G V + LP QWLWDM+DEFVYQF SF  +R+  K KTE+E+ +L +    W+ Y VLN L +LV+KS I
Sbjct:   67 IPEDVKRFLVMFHQAILENDLPTITSMYESGWNKLTQAHYLNNEWPEAELIAPLVGNDQVFLTLYRELYFRHVYARLQPTIDDRFQSYENICELFNYLLNSEGPVPLDLPIQWLWDMLDEFVYQFTSFSHWRSSPKAKTEEELEMLAESPNIWSSYSVLNVLYSLVQKSQI 237          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DROAN (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila ananassae GN=GF25000 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.740e-39
Identity = 81/206 (39.32%), Postives = 128/206 (62.14%), Query Frame = 2
Query:   50 DYEDAPADYDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVL--HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEI-ALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            DY +    YD  A       D+ Y+ N+    +P++VK F+++  + I+E  +Y+I  MYE +F  +SD  F  + WP    V   VDND VF +LY+E+++RH++AR+   P L QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K++ EI  L   +   W++  +LN L +LV+ S I
Sbjct:    6 DYGNNAEYYDEYAHTGDPQLDMEYERNYYASRMPENVKYFLINFCQAIKEGTLYDIQNMYENTFPQISDHHFDKSAWPDEQEVGPIVDNDKVFLILYKELYYRHIHARIPGGPKLDQRINSFFNYCDFFNLIISSQNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQDEIQQLCVNHSNVWSILCILNVLHSLVDISNI 211          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DROPS (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila pseudoobscura pseudoobscura GN=GA19025 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 78/198 (39.39%), Postives = 128/198 (64.65%), Query Frame = 2
Query:   74 YDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEI-ALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            YD  A     + D+ Y+ N+    +P++VK F+++  + ++E N+Y+I  MYE +F  +SD  F  + WP    V   V+ND VF +LY+E+++RH++AR+   P L QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K+++EI  L   +   W++  +LN L +LV+ S I
Sbjct:   16 YDDFAHTGDPALDMEYERNYYASRMPENVKYFLMNFCQAVKEGNLYDIQNMYENTFPQISDHHFDKSSWPEETEVGALVENDKVFMILYKELYYRHIHARIPGGPKLDQRINSFFNYCDFFNLIISAPNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQEEIQQLCVNHSNVWSILCILNVLHSLVDISNI 213          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DROPE (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila persimilis GN=GL25016 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 78/198 (39.39%), Postives = 128/198 (64.65%), Query Frame = 2
Query:   74 YDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEI-ALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            YD  A     + D+ Y+ N+    +P++VK F+++  + ++E N+Y+I  MYE +F  +SD  F  + WP    V   V+ND VF +LY+E+++RH++AR+   P L QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K+++EI  L   +   W++  +LN L +LV+ S I
Sbjct:   16 YDDFAHTGDPALDMEYERNYYASRMPENVKYFLMNFCQAVKEGNLYDIQNMYENTFPQISDHHFDKSSWPEETEVGALVENDKVFMILYKELYYRHIHARIPGGPKLDQRINSFFNYCDFFNLIISAPNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQEEIQQLCVNHSNVWSILCILNVLHSLVDISNI 213          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_BRUMA (Eukaryotic translation initiation factor 3 subunit L OS=Brugia malayi GN=Bm1_25770 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  134 VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYV---------DNDHVFCLLYREMWFRHLYARL--SPTLKQRIDSWDNYCSLFQVVL---HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQE---IALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            VPD V  ++++  R I E+NV EIH +YE  F  L++R F+   WP+ +AV + V          +  +F +LY+E++FRH+Y R+   P+L  R DS+ NY  LF  VL      +++QLPN WLWD++DEFVY  Q FC Y+A    ++ +E   +  + Q   AWN+Y VLN L +L+ KS I
Sbjct:   35 VPDDVAQYLIYFKRMIDEENVVEIHNLYEHGFPDLTERYFQQRLWPNEEAVENIVGSGNRIVAFSDSRIFIILYKELYFRHVYTRMQRGPSLAHRFDSYQNYQELFCEVLTPEKQPLSLQLPNVWLWDIIDEFVY--QPFCLYKANPGKRSPEEYEDLLSIEQNQSAWNIYPVLNILYSLLAKSQI 218          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_CAEEL (Eukaryotic translation initiation factor 3 subunit L OS=Caenorhabditis elegans GN=eif-3.L PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 74/198 (37.37%), Postives = 116/198 (58.59%), Query Frame = 2
Query:   77 DGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVD-NDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLHGV--VNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALL---RQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            D S   R ++     D + VP+ V  ++V+  R + E+NV EI  +Y+ +F  L++R F+D  WP  + V   +   + +F +LY+E+++R LYAR +  P L  R +S+ NY  LF  +L     + + LPN WLWD++DEFVYQFQ+FC Y+A    +   E+  L    +   AWN+Y VLN L +L+ KS I++
Sbjct:   13 DHSDRRRTNTFSSSADEDGVPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRDRMWPDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFMNYQELFSELLSSKDPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVE 210          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_CAEBR (Eukaryotic translation initiation factor 3 subunit L OS=Caenorhabditis briggsae GN=eif-3.L PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 71/179 (39.66%), Postives = 109/179 (60.89%), Query Frame = 2
Query:  134 VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVD-NDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLHGV--VNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALL---RQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            VP+ V  ++V+  R I E+NV EI  +Y+ +F  L++R F+D  WP  + V   +   + +F +LY+E+++R LYAR +  P L  R +S+ NY  LF  +L     + + LPN WLWD++DEFVYQFQ+FC Y+A    +   E+  L    +   AWN+Y VLN L +L+ KS I++
Sbjct:   30 VPNEVADYLVYFSRMIDEQNVPEILTLYDQAFPDLTERFFRDRMWPDENVVERIIGPGNKLFIILYKELYYRQLYARNARGPLLVHRYESFMNYQELFSELLSSKDPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVE 208          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_YARLI (Eukaryotic translation initiation factor 3 subunit L OS=Yarrowia lipolytica GN=YALI0D03399g PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.554e-32
Identity = 68/172 (39.53%), Postives = 105/172 (61.05%), Query Frame = 2
Query:  134 VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPS-VDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            +P  VK F+ + +R + + +VYE+H  YE SF  L+D+ +K++ WP  V  VA  V ND VF   Y E+++RHLYA+L+PT  +R +S+ NYC+LF  +L+  G V+++LP  W W +VDEF+YQ+ S+  +  K  + ++            W  Y VLN L +L EK+ I
Sbjct:   42 IPTVVKDFIQYFHRCLSDNSVYELHGCYENSFGKLTDKFYKNSHWPHPVAQVAPLVKNDPVFLYFYSELYYRHLYAKLTPTPLERFESYSNYCNLFNYILNSDGPVDLELPTSWAWGIVDEFIYQYNSY--WMTKEAHNSDGVA------PDTWGTYSVLNVLYSLSEKTKI 205          
The following BLAST results are available for this feature:
BLAST of FC930910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_DROGR7.537e-4040.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROMO1.679e-3940.91Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CRYNE2.193e-3945.03Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROAN3.740e-3939.32Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROPS1.088e-3839.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROPE1.088e-3839.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BRUMA4.006e-3340.32Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CAEEL1.522e-3237.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CAEBR5.784e-3239.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_YARLI7.554e-3239.53Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110D02EF PostHarvP1 Citrus clementina cDNA clone C34110D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930910 ID=FC930910; Name=FC930910; organism=Citrus clementina; type=EST; length=651bp
GAACGAATTAAACTCTGATCTATAAGCAATAATGGCGGCGGCTAGTTACG
ATTACGAAGACGCTCCGGCCGATTACGATGGTTCAGCGGATGCGCGCGCT
TCATCCCAAGACCTAGGCTACGACCCTAACTTCGTGCCTGACTCCGTAAA
GTCATTCGTTGTTCATCTTTACCGCCACATTCGCGAGAAGAATGTCTACG
AGATCCACCAGATGTACGAGACGTCGTTTCAGAGTCTCTCCGACCGCCTC
TTCAAGGATACTCCCTGGCCATCCGTTGACGCCGTCGCTCATTATGTTGA
CAATGATCATGTTTTCTGTCTTCTCTATCGCGAGATGTGGTTCCGCCACT
TGTACGCTAGATTGTCGCCTACTCTCAAGCAGAGGATTGATTCTTGGGAC
AATTATTGTAGCCTGTTTCAGGTGGTGCTGCATGGAGTGGTGAATATGCA
GTTGCCAAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTTTACCAGT
TCCAGAGTTTCTGTCAGTACAGAGCCAAGATGAAGAACAAGACAGAGCAG
GAGATTGCACTTTTGAGGCAGTATGATCAGGCTTGGAATGTTTATGGCGT
GCTCAATTTCTTGCAAGCACTCGTGGAGAAGTCGATGATCATTCAGATTT
T
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