FC930910

Overview
NameFC930910
Unique NameFC930910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_MONBE (Eukaryotic translation initiation factor 3 subunit L OS=Monosiga brevicollis GN=39212 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 63/181 (34.81%), Postives = 106/181 (58.56%), Query Frame = 2
Query:  134 VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDN----DHVFCLLYREMWFRHLYARLSPT-----LKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKN-KTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            VP  V++++    + I+EK++ EI + YE  ++  +D+ FKD+ WP    +    +     D  F  LY E+++R +Y R S T     ++ R  S+D+Y  L  + +     ++++LPN+WLWDM+DEF+YQFQ F  +R+++ + KTE +   + +   AWNV  VLN L +L+ KS I
Sbjct:   20 VPQEVQNYLRSFNKAIQEKSLKEIEEHYEYKWRRTTDQYFKDSRWPEPVYIQAMFEQEGQEDSYFVSLYPELYYRDVYYRSSNTNIEITVEDRHASYDHYIELINMFVEPDAPLDLELPNKWLWDMIDEFLYQFQDFVIFRSRVDDAKTESDYQEIAERPNAWNVTIVLNALHSLILKSEI 200          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_PHANO (Eukaryotic translation initiation factor 3 subunit L OS=Phaeosphaeria nodorum GN=SNOG_08318 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.746e-20
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAK--MKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYC+LF  +L+  G V++++PN  W WD++DEF+YQF SFC YR K  +KN  E+EI LLR+    W  Y VLN L +L+++S I
Sbjct:   71 TLETKFASYDNYCNLFHYILNSEGPVDLEVPNYYWAWDVIDEFIYQFNSFCSYRQKVALKNDNEEEITLLRENPNTWGCYSVLNVLYSLIQRSQI 165          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DICDI (Eukaryotic translation initiation factor 3 subunit L OS=Dictyostelium discoideum GN=eif3l PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 53/198 (26.77%), Postives = 106/198 (53.54%), Query Frame = 2
Query:  104 SQDLGYDPNFVPDS------VKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDN--------DHVFCLLYREMWFRHLYARL-SPTLKQRIDSWDNYCSLFQVVLHGV----VNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            +Q   +  NF+P +      V ++ ++LY + + ++  +I   Y++ F+S  +  +     P+++ +   + +        D  F LLY+E+++R+ YA +  P +   ++SW NY  +F  +L       V + LPN WLWD+VDEFVYQ+ +F +++ K     +Q++  L +  + W+   V+ +L  +++KS I
Sbjct:  114 NQSAQFQSNFLPPATALYTPVINYFINLYNNFKSQSHQDILVSYDSFFKSC-ETYYPHCALPTIENLIPILGDKFEESSFTDRFFVLLYKEIYYRYYYALVFQPNINTCVESWQNYYQIFHTLLSANSPNDVEIDLPNAWLWDLVDEFVYQYHTFAKFKLK-----KQDVDFLSENPEIWDTTNVIRYLYYIIKKSQI 305          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_NEOFI (Eukaryotic translation initiation factor 3 subunit L OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_085780 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L++KS I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSEGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQKSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_EMENI (Eukaryotic translation initiation factor 3 subunit L OS=Emericella nidulans GN=AN5954 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L++KS I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSDGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQKSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPFU (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus fumigatus GN=AFUA_2G10380 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L++KS I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSEGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQKSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPFC (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_026190 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L++KS I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSEGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQKSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_COCIM (Eukaryotic translation initiation factor 3 subunit L OS=Coccidioides immitis GN=CIMG_04353 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V++++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L+++S I
Sbjct:   77 TLETKFASYDNYCSLFHYILNSDGPVDLEVPSYYWAWDVIDEFIYQFESFCRYRNRVARTGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQRSQI 171          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPTN (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_04476 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L+++S I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSDGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQRSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPOR (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus oryzae GN=AO090011000599 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L+++S I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSDGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQRSQI 166          
The following BLAST results are available for this feature:
BLAST of FC930910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_MONBE1.526e-2434.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PHANO1.746e-2048.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DICDI8.663e-2026.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_NEOFI2.134e-1845.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_EMENI2.134e-1845.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPFU2.134e-1845.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPFC2.134e-1845.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_COCIM4.754e-1844.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPTN4.754e-1844.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPOR4.754e-1844.21Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110D02EF PostHarvP1 Citrus clementina cDNA clone C34110D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930910 ID=FC930910; Name=FC930910; organism=Citrus clementina; type=EST; length=651bp
GAACGAATTAAACTCTGATCTATAAGCAATAATGGCGGCGGCTAGTTACG
ATTACGAAGACGCTCCGGCCGATTACGATGGTTCAGCGGATGCGCGCGCT
TCATCCCAAGACCTAGGCTACGACCCTAACTTCGTGCCTGACTCCGTAAA
GTCATTCGTTGTTCATCTTTACCGCCACATTCGCGAGAAGAATGTCTACG
AGATCCACCAGATGTACGAGACGTCGTTTCAGAGTCTCTCCGACCGCCTC
TTCAAGGATACTCCCTGGCCATCCGTTGACGCCGTCGCTCATTATGTTGA
CAATGATCATGTTTTCTGTCTTCTCTATCGCGAGATGTGGTTCCGCCACT
TGTACGCTAGATTGTCGCCTACTCTCAAGCAGAGGATTGATTCTTGGGAC
AATTATTGTAGCCTGTTTCAGGTGGTGCTGCATGGAGTGGTGAATATGCA
GTTGCCAAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTTTACCAGT
TCCAGAGTTTCTGTCAGTACAGAGCCAAGATGAAGAACAAGACAGAGCAG
GAGATTGCACTTTTGAGGCAGTATGATCAGGCTTGGAATGTTTATGGCGT
GCTCAATTTCTTGCAAGCACTCGTGGAGAAGTCGATGATCATTCAGATTT
T
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