FC930910

Overview
NameFC930910
Unique NameFC930910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPNC (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An16g04580 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L+++S I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSDGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQRSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPCL (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus clavatus GN=ACLA_069410 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.754e-18
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            TL+ +  S+DNYCSLF  +L+  G V +++P+  W WD++DEF+YQF+SFC+YR ++      E+E  LLR+    W  Y VLN L +L+++S I
Sbjct:   72 TLETKFASYDNYCSLFHYILNSEGPVELEVPSYYWAWDVIDEFIYQFESFCRYRNRVARSGSNEEEAQLLRENPNTWGCYSVLNVLYSLIQRSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_NEUCR (Eukaryotic translation initiation factor 3 subunit L OS=Neurospora crassa GN=NCU06279 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.806e-17
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  365 SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            S  L+ +  S+D+YCSLF  +L+  G V+++ P+  W WD++DEF+YQF SF  YRA++  +   E+EIA+LR+    W  Y VLN L +L++KS I +
Sbjct:   68 SAGLEVKFSSYDSYCSLFHFILNSEGPVDLEPPSYYWAWDVIDEFIYQFNSFSSYRARIARQGNNEEEIAMLRENPNTWGCYSVLNVLYSLIQKSQITE 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_SCLS1 (Eukaryotic translation initiation factor 3 subunit L OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_00570 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  365 SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            S  L+ +  S+DNYCSLF  +L+  G V+++ P+  W WD++DEF+YQF SFC YR ++  +   E+EI +LR+    W  Y VLN L +L+++S I
Sbjct:   70 SAPLEVKFASYDNYCSLFHFILNSDGPVDLEPPSYYWAWDVIDEFIYQFNSFCSYRNRVARQGTNEEEIQILREAPNTWGCYSVLNVLYSLIQRSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_BOTFB (Eukaryotic translation initiation factor 3 subunit L OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_06600 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  365 SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKM--KNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            S  L+ +  S+DNYCSLF  +L+  G V+++ P+  W WD++DEF+YQF SFC YR ++  +   E+EI +LR+    W  Y VLN L +L+++S I
Sbjct:   70 SAPLEVKFASYDNYCSLFHFILNSDGPVDLEPPSYYWAWDVIDEFIYQFNSFCSYRNRVARQGTNEEEIQILREAPNTWGCYSVLNVLYSLIQRSQI 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_CHAGB (Eukaryotic translation initiation factor 3 subunit L OS=Chaetomium globosum GN=CHGG_03070 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  371 TLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKMKNK--TEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            TL+ +  S+DNYC+LF  +L+  G V+++ P   W WD++DEF+YQF +FC YRA++  +   E+E  +LR     W  Y VLN L +L++KS I +
Sbjct:   70 TLETKFASYDNYCALFHYILNSEGPVDLEPPTYYWAWDVIDEFIYQFNTFCTYRARIARQAGNEEEAQILRDNPNTWGCYSVLNVLYSLIQKSQITE 166          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_MAGGR (Eukaryotic translation initiation factor 3 subunit L OS=Magnaporthe grisea GN=MGG_05266 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.295e-15
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  365 SPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQ-WLWDMVDEFVYQFQSFCQYRAKMKNK--TEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            S  L+ +  S+D YCSLF  +L+  G V+++ P+  W WD++DEF+YQF SF  YR ++  +   E+E  +LR+    W  Y VLN L +L+++S I++
Sbjct:   65 SAPLEVKFQSYDQYCSLFHFILNSDGPVDLEPPSYYWAWDVIDEFIYQFNSFSSYRMRIARQANNEEEAQILRENPNTWGCYSVLNVLYSLIQRSQILE 163          
The following BLAST results are available for this feature:
BLAST of FC930910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_ASPNC4.754e-1844.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPCL4.754e-1844.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_NEUCR1.806e-1743.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_SCLS13.081e-1743.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BOTFB3.081e-1743.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CHAGB4.024e-1742.27Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_MAGGR1.295e-1539.39Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110D02EF PostHarvP1 Citrus clementina cDNA clone C34110D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930910 ID=FC930910; Name=FC930910; organism=Citrus clementina; type=EST; length=651bp
GAACGAATTAAACTCTGATCTATAAGCAATAATGGCGGCGGCTAGTTACG
ATTACGAAGACGCTCCGGCCGATTACGATGGTTCAGCGGATGCGCGCGCT
TCATCCCAAGACCTAGGCTACGACCCTAACTTCGTGCCTGACTCCGTAAA
GTCATTCGTTGTTCATCTTTACCGCCACATTCGCGAGAAGAATGTCTACG
AGATCCACCAGATGTACGAGACGTCGTTTCAGAGTCTCTCCGACCGCCTC
TTCAAGGATACTCCCTGGCCATCCGTTGACGCCGTCGCTCATTATGTTGA
CAATGATCATGTTTTCTGTCTTCTCTATCGCGAGATGTGGTTCCGCCACT
TGTACGCTAGATTGTCGCCTACTCTCAAGCAGAGGATTGATTCTTGGGAC
AATTATTGTAGCCTGTTTCAGGTGGTGCTGCATGGAGTGGTGAATATGCA
GTTGCCAAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTTTACCAGT
TCCAGAGTTTCTGTCAGTACAGAGCCAAGATGAAGAACAAGACAGAGCAG
GAGATTGCACTTTTGAGGCAGTATGATCAGGCTTGGAATGTTTATGGCGT
GCTCAATTTCTTGCAAGCACTCGTGGAGAAGTCGATGATCATTCAGATTT
T
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