FC930912

Overview
NameFC930912
Unique NameFC930912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930912_ssr94 microsatellite FC930912_ssr94:94..105. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:12..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMF (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.816e-12
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  442 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 25.409 bits (54), Expect = 3.816e-12
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2 
Query:  641 HENLMELLIMIDA 679
            ++NLMELLIMIDA
Sbjct:   70 NQNLMELLIMIDA 82
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIV (Ribose-phosphate pyrophosphokinase 1 OS=Listeria ivanovii GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.816e-12
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  442 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 25.409 bits (54), Expect = 3.816e-12
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2 
Query:  641 HENLMELLIMIDA 679
            ++NLMELLIMIDA
Sbjct:   70 NQNLMELLIMIDA 82
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIN (Ribose-phosphate pyrophosphokinase 1 OS=Listeria innocua GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.816e-12
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  442 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 25.409 bits (54), Expect = 3.816e-12
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2 
Query:  641 HENLMELLIMIDA 679
            ++NLMELLIMIDA
Sbjct:   70 NQNLMELLIMIDA 82
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_VIBPA (Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus GN=prs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.819e-12
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  463 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            +KLF+G A P L+Q IA  + + LG  ++ RF+DGE+ VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDASVSRFSDGEVAVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 3.819e-12
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P    ++NLMEL++MIDA
Sbjct:   60 CAPT---NDNLMELVVMIDA 76
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVY (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus (strain YJ016) GN=prs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.958e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  463 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 4.958e-12
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P    ++NLMEL++MIDA
Sbjct:   60 CAPT---NDNLMELVVMIDA 76
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVU (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus GN=prs PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.958e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  463 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 24.6386 bits (52), Expect = 4.958e-12
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P    ++NLMEL++MIDA
Sbjct:   60 CAPT---NDNLMELVVMIDA 76
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_HELHP (Ribose-phosphate pyrophosphokinase OS=Helicobacter hepaticus GN=prs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.960e-12
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  466 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 642
            K+FSG+A+   S E+A  + + L K  I RF+DGEI VQ+ ESVRG D++++QPTC PA
Sbjct:    5 KIFSGSAHTLFSNEVAKCLDISLSKTTINRFSDGEINVQIGESVRGKDIFIIQPTCAPA 63

HSP 2 Score: 22.3274 bits (46), Expect = 4.960e-12
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P    +++LMELLIM DA
Sbjct:   60 CAPA---NDHLMELLIMTDA 76
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS2_STRMU (Ribose-phosphate pyrophosphokinase 2 OS=Streptococcus mutans GN=prs2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.349e-12
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  442 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 639
            N   +  +KLFS T+N A++++IA  +GV LGK++ ++F+DGEI + ++ESVRG D+Y++Q T  P
Sbjct:    3 NAYPDKHLKLFSLTSNTAIAEKIAKVVGVPLGKLSSRQFSDGEIMINIEESVRGNDIYVIQSTSYP 68

HSP 2 Score: 24.2534 bits (51), Expect = 8.349e-12
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 2 
Query:  623 SPPVLRHENLMELLIMIDAC 682
            S PV  H  L ELLIM+DAC
Sbjct:   66 SYPVNNH--LWELLIMVDAC 83
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_XANCP (Ribose-phosphate pyrophosphokinase OS=Xanthomonas campestris pv. campestris GN=prs PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.085e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  469 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 642
            +FSG AN  L+Q I   +GV +GK  + RF+DGE+ V+++ESVR  +V+++QPTC P+
Sbjct:    9 VFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPS 66

HSP 2 Score: 25.409 bits (54), Expect = 1.085e-11
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P     ENLMELL++IDA
Sbjct:   63 CAPSA---ENLMELLVLIDA 79
[Close]
BLAST of FC930912 vs. ExPASy Swiss-Prot
Match: KPRS_XANAC (Ribose-phosphate pyrophosphokinase OS=Xanthomonas axonopodis pv. citri GN=prs PE=3 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.085e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  469 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 642
            +FSG AN  L+Q I   +GV +GK  + RF+DGE+ V+++ESVR  +V+++QPTC P+
Sbjct:    9 VFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPS 66

HSP 2 Score: 25.409 bits (54), Expect = 1.085e-11
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 2 
Query:  620 CSPPVLRHENLMELLIMIDA 679
            C+P     ENLMELL++IDA
Sbjct:   63 CAPSA---ENLMELLVLIDA 79
The following BLAST results are available for this feature:
BLAST of FC930912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
KPRS1_LISMF3.816e-1243.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISIV3.816e-1243.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS1_LISIN3.816e-1243.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS_VIBPA3.819e-1249.15Ribose-phosphate pyrophosphokinase OS=Vibrio parah... [more]
KPRS_VIBVY4.958e-1249.15Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_VIBVU4.958e-1249.15Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_HELHP4.960e-1252.54Ribose-phosphate pyrophosphokinase OS=Helicobacter... [more]
KPRS2_STRMU8.349e-1245.45Ribose-phosphate pyrophosphokinase 2 OS=Streptococ... [more]
KPRS_XANCP1.085e-1148.28Ribose-phosphate pyrophosphokinase OS=Xanthomonas ... [more]
KPRS_XANAC1.085e-1148.28Ribose-phosphate pyrophosphokinase OS=Xanthomonas ... [more]

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Properties
Property NameValue
Genbank descriptionC34110D05EF PostHarvP1 Citrus clementina cDNA clone C34110D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930912 ID=FC930912; Name=FC930912; organism=Citrus clementina; type=EST; length=682bp
GGAAAATCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAAC
CGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGAA
AGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGAA
ACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCACA
ATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTCG
GTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCGG
GTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCATT
GAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACGC
TGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAACT
ACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTTC
CCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATAA
AGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAGA
GGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAATC
TCATGGAGCTTTTGATAATGATAGATGCGTGT
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