FC930913

Overview
NameFC930913
Unique NameFC930913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930913 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.813e-26
Identity = 68/151 (45.03%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  280 SPFVYRVIWALKLKGVPYEFVAEDLSNKSALLLKHNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNP--LMPNNPYDRALARFWIKFAEDK----GAAVWKMFRSTGQELQNTMKEALEMLQTVEEHGLGEK-NFSWRHIGLVD*RLV 711
            S F  R+  AL  K + YE+  EDL NKS LLL+ NP+HKKIPVL+H GKP+CES++ +EYIEE W      L+P++PYDRA ARFW  + + K    G  +W    + G+E +   K+ +E L+ V E  LG+K  F     G VD  L+
Sbjct:   14 SMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLW---TTKGEEQEAAKKDFIECLK-VLEGALGDKPYFGGESFGFVDIALI 160          
BLAST of FC930913 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 67/151 (44.37%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  280 SPFVYRVIWALKLKGVPYEFVAEDLSNKSALLLKHNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQN--PLMPNNPYDRALARFWIKFAEDK----GAAVWKMFRSTGQELQNTMKEALEMLQTVEEHGLGEK-NFSWRHIGLVD*RLV 711
            S F  R+  AL  K + YE+  EDL NKS LLL+ NP+HKKIPVL+H GKP+CES++ +EYIEE W      L+P++PYDRA ARFW  + + K    G  +W    + G+E +   K+ +E L+ V E  LG++  F     G VD  L+
Sbjct:   14 SMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLW---ATKGEEQEAAKKDFIECLK-VLEGALGDRPYFGGESFGFVDIALI 160          
BLAST of FC930913 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 65/161 (40.37%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  277 LSPFVYRVIWALKLKGVPYEFVAEDLSNKSALLLKHNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNP--LMPNN------PYDRALARFWIKFAE----DKGAAVWKMFRSTGQELQNTMKEALEMLQTVEEHGLGEKNF----SWRHIGLVD*RLV 711
            +SPF  R   A+  KG+ +E+  EDL NKS LLL+ NPVH+KIPVL+H G+PV ES+VIL+Y+++ +P  P  L P N       Y RA ARFW  + +    D G+ +W++    G+      +E  E+L+T+E   LG++ F        +G VD  LV
Sbjct:   14 VSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRL---KGEPQAAAGREMAEILRTLEAE-LGDREFFGGGGGGRLGFVDVALV 170          
BLAST of FC930913 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 65/161 (40.37%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  277 LSPFVYRVIWALKLKGVPYEFVAEDLSNKSALLLKHNPVHKKIPVLVHGGKPVCESMVILEYIEETWPQNP--LMPNN------PYDRALARFWIKFAE----DKGAAVWKMFRSTGQELQNTMKEALEMLQTVEEHGLGEKNF----SWRHIGLVD*RLV 711
            +SPF  R   A+  KG+ +E+  EDL NKS LLL+ NPVH+KIPVL+H G+PV ES+VIL+Y+++ +P  P  L P N       Y RA ARFW  + +    D G+ +W++    G+      +E  E+L+T+E   LG++ F        +G VD  LV
Sbjct:   14 VSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRL---KGEPQAAAGREMAEILRTLEAE-LGDREFFGGGGGGRLGFVDVALV 170          
BLAST of FC930913 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  256 VKLHGALLSPFVYRVIWALKLKGVPYEFVAEDLS-NKSALLLKHNPVHKKIPVLV-HGGKPVCESMVILEYIEETWPQNP-------LMPNNPYDRALARFWIKFAEDK 555
            +++ G  +SPF  R   AL L+GV YE + E L   KS  LL  NPV+ KIPVL+   G+ +CES VI++YIE+   ++        L+P++PY+RA+ RFW  F +DK
Sbjct:    1 MRVLGGEVSPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDK 109          
The following BLAST results are available for this feature:
BLAST of FC930913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX4_TOBAC4.813e-2645.03Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC1.072e-2544.37Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTU1_ORYSI1.227e-2140.37Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSJ1.602e-2140.37Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_MAIZE8.515e-1543.12Probable glutathione S-transferase BZ2 OS=Zea mays... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110D06EF PostHarvP1 Citrus clementina cDNA clone C34110D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930913 ID=FC930913; Name=FC930913; organism=Citrus clementina; type=EST; length=760bp
CTCGCCGGGGGCACCAACGTAAAAAAATATTTAATTAAAGTCATCGTACT
AGTTCTTTGAATTCATCATTAATTAATCGTTTTATTAATGCGAAATCGAA
GCTTTCTGCTCAAGAAATCGAAGCTTTCTGCTCAAGAAAGCGCATTCCAT
AAATCACTATAAATTCAGAAACATGTGTAATGAGTTATCAGCTATACTCA
AGATCGACCAAAAAACCTGATATTCAAATTCAACCTAAGAATTATCATGG
CTGAAGTGAAGCTTCATGGGGCACTGCTGAGTCCATTTGTTTACAGGGTG
ATTTGGGCTCTGAAATTGAAAGGCGTGCCATATGAATTTGTTGCAGAAGA
TCTCTCAAACAAAAGTGCTTTGCTTTTGAAGCACAATCCGGTTCACAAGA
AGATCCCAGTGCTTGTCCATGGCGGAAAACCAGTTTGTGAGTCCATGGTT
ATTCTCGAATACATCGAAGAGACGTGGCCACAGAATCCCTTGATGCCAAA
TAATCCTTATGATAGAGCTCTTGCTCGATTCTGGATTAAATTCGCCGAAG
ACAAGGGTGCTGCTGTTTGGAAAATGTTTCGTAGCACTGGACAAGAACTA
CAAAACACAATGAAGGAAGCCTTGGAAATGCTACAAACCGTTGAAGAGCA
TGGCTTGGGAGAGAAAAATTTTTCATGGAGACATATTGGCTTAGTGGACT
AGCGTTTGGTCATTGTTATTGGTGCAGTCATGAGATGTACGGAGTAAATA
TTGATCAACA
back to top