FC930922

Overview
NameFC930922
Unique NameFC930922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15236 contig Ccv1_Contig15236:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 64/174 (36.78%), Postives = 90/174 (51.72%), Query Frame = 2
Query:   41 MNTRAIFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 559
            M T  +  L  +   +GA  AT    NNC  TIWP  +   GG       F L S    +++VP+  + GR WART CS +  G  +C T DCG GQ++C+ +G  PPA+L E+TI     QDF+D+S++DGFNL +  +   G    C   SC        P+++A     GN
Sbjct:    1 MATSPVLFLLLAVFAAGASAATFNIKNNCGFTIWPAGIPVGGG-------FALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCG-GQLSCSLSGR-PPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSCPPPQAYQHPNDVATHACSGN 164          
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.490e-22
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   56 IFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPS-PWKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSC 499
            +  L  +    GA+ AT T TN C  T+WP A    GG QLS            T++VP+    GR W RT CS D SG+ +CAT DC +G ++C  +G   P +L EFTI     QDF+DLS++DG+N+ +S +   G   TC  S C
Sbjct:   12 VVVLVATLAAGGANAATFTITNRCSFTVWPAATPVGGGVQLSPG-------QTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDC-AGALSCTLSG-QKPLTLAEFTIGG--SQDFYDLSVIDGYNVAMSFSCSSGVTVTCRDSRC 149          
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 61/175 (34.86%), Postives = 94/175 (53.71%), Query Frame = 2
Query:   38 MMNTRAIFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 559
            M  + A+  L  +   +GA  AT   TNNC  T+WP  +   G       GF+L SK    ++VP+    GR W RT CS  ++G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DGFNL +  +   G    C  ++C    +   P+++A    +GN
Sbjct:    1 MATSSAVLFLLLAVFAAGASAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCS-FNNGRGSCATGDC-AGALSCTLSG--QPATLAEYTIGG--SQDFYDISVIDGFNLAMDFSCSTGVALKCRDANCPDAYHH--PNDVATHACNGN 160          
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = 2
Query:   38 MMNTRAIFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 559
            M  + A+  L  +   +GA  AT   TNNC  T+WP  +   G       GF+L SK    ++VP+    GR W RT CS  ++G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DG+NL +  +   G    C  S C    +   P+++A    +GN
Sbjct:    1 MATSSAVLFLLLAVFAAGASAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCS-FNNGRGSCATGDC-AGALSCTLSG--QPATLAEYTIGG--SQDFYDISVIDGYNLAMDFSCSTGVALKCRDSGCPDAYHH--PNDVATHACNGN 160          
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 59/175 (33.71%), Postives = 93/175 (53.14%), Query Frame = 2
Query:   38 MMNTRAIFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGN 559
            M  + A+     +   +GA  AT   TNNC  T+WP  +   G       GF+L SK    ++VP+    GR W RT CS  ++G+ +CAT DC +G ++C  +G   PA+L E+TI     QDF+D+S++DG+NL +  +   G    C  ++C    +   P+++A    +GN
Sbjct:    1 MATSSAVLFFLLAVFAAGASAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCS-FNNGRGSCATGDC-AGALSCTLSG--QPATLAEYTIGG--SQDFYDISVIDGYNLAMDFSCSTGVALKCRDANCPDAYHH--PNDVATHACNGN 160          
BLAST of FC930922 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 2
Query:   38 MMNTRAIFCLTFSFLISGAHLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPW-KGRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSC 499
            M  +  +  L  +   + A  AT T TNNC  T+WP A+   GG QL +           TL+VP+    GR W RT CS  + G  +C T DC +G ++C  +G   PA+L EF+I  +   D++D+S++D +NL +  +   G    C  SSC
Sbjct:    1 MATSSTVLFLLLAVFAASASAATFTITNNCGYTVWPAAIPVGGGQQLDQG-------QTWTLNVPAGTNSGRIWGRTGCS-FNGGSGSCQTGDC-AGALSCTLSG--QPATLAEFSIGGE--HDYYDISVIDVYNLAMDFSCSTGDALQCRDSSC 142          
The following BLAST results are available for this feature:
BLAST of FC930922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLP_WHEAT1.011e-2336.78Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
TLP_ORYSJ2.490e-2240.27Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST1_AVESA2.108e-2134.86Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA2.753e-2134.86Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.366e-2033.71Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST4_AVESA6.346e-1834.84Thaumatin-like pathogenesis-related protein 4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34110E03EF PostHarvP1 Citrus clementina cDNA clone C34110E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930922 ID=FC930922; Name=FC930922; organism=Citrus clementina; type=EST; length=764bp
GACAAATAAAAGTTAATCAAGCAAAGCCTCAGCTTTCATGATGAATACCC
GAGCAATATTTTGCCTTACCTTCTCCTTCCTCATCTCTGGGGCGCACTTG
GCAACGATTACGTTCACAAACAACTGCCAAAACACTATTTGGCCGGGAGC
CCTAACCGCAGATGGAGGTGCTCAGCTGTCAGAAAATGGGTTCGAGTTAG
CATCCAAAGCAAAAAAGACTCTCGATGTTCCTTCCCCTTGGAAAGGCCGT
TTCTGGGCTCGAACACAGTGCTCTAGAGATTCCTCCGGCAAGTTCACTTG
CGCCACTGCAGATTGTGGCTCAGGCCAAGTCACATGCAACGGTAATGGTG
CAGCCCCACCGGCATCTCTCGTGGAATTCACAATTGCTGCAGACAAAGGA
CAAGATTTCTTCGATCTTAGCCTCGTTGATGGCTTTAACTTGCCTCTTTC
AGTTGCCCCACAAGGCGGTTCTGGTGCTACTTGCACGACATCTAGCTGTA
AAGCCAACGTGAATGCTGTTTGTCCATCAGAGCTAGCAGTCAAAGGATCC
GATGGGAATGTTATTGCTTGCAAGAGTGCATGTGCAGCTTTTAATGAACC
ACAATATTGTTGCACTGGGGCATTCATAAACCTGAGACTTGCCCACCGAC
TAAATATTCTAAGATTTTCAAAGACCAGTGCCCTCAAGCTTATAGCTATG
CTTATGATGATCGCACTAGCACATTTTCTTGCACTGGTGGTCCCTAATTA
CGATATACTTTCTG
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