FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.234e-83
Identity = 155/191 (81.15%), Postives = 170/191 (89.01%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMV-AQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E+ AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++VDVKTTDN+TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIM+  +A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKI
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKI 218          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.930e-78
Identity = 141/190 (74.21%), Postives = 161/190 (84.74%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAP+ F VRNVGKTLVTRTQGTKIASE LK RVFEVSL DL   E+ A+RK+RLR EDVQG+N LTNFWGM+FTTDKLRSLVRKW TLIEA+VDVKTTD +TLR+FCI FTK+   Q+KRTCYAQ++QIRQIR+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN FIRKVK+
Sbjct:   28 DWYDIKAPTMFTVRNVGKTLVTRTQGTKIASEALKGRVFEVSLADLQKNEDDAFRKMRLRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKV 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.249e-76
Identity = 136/190 (71.58%), Postives = 165/190 (86.84%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F VRN+GKTLV+RTQGTKIAS+GLK R+FE+SL DL N+E+ ++RK++L+ EDVQGKNVLTNF GM+FTTDK+RSLVRKW +LIE +VDVKTTD +TLR+FCIGFTKR  +Q KRTCYAQ++QIR+IR KM EI+  +  +CDLK LV KFI EVIG+EIEK+ + IYPLQNV+IRKVKI
Sbjct:   28 DWYDIKAPSMFSVRNIGKTLVSRTQGTKIASDGLKGRIFEISLADLNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFTKRRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKI 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.578e-73
Identity = 134/190 (70.53%), Postives = 160/190 (84.21%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F VRNVGKTLV R+QG K A++ LK R+ EVSLGDL  EEE ++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KI
Sbjct:   28 DWYDIKAPSIFDVRNVGKTLVNRSQGLKNANDSLKGRIIEVSLGDLNKEEEQSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKI 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.083e-71
Identity = 129/190 (67.89%), Postives = 158/190 (83.16%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM+FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P+QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQNV++RK KI
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKI 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.415e-71
Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F  RNVGKTLV R+ G K A++ LK R+ E+SL DL N+EE A+RKI+LR ++VQGKN LTNF GM+F++DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQIRQIR+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQNVF+ K KI
Sbjct:   28 DWYDIKAPSIFEKRNVGKTLVNRSSGLKNANDSLKGRIVEISLADLNNDEEQAFRKIKLRIDEVQGKNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKI 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.413e-71
Identity = 128/190 (67.37%), Postives = 158/190 (83.16%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYDIKAPS F  RNVGKTLV R+QG K A++ L+ R+ EVSL DL  +EE ++RKI+LR +++QG+N LTNF GM+FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P QVK+T YAQT+Q+R++R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KI
Sbjct:   28 DWYDIKAPSIFETRNVGKTLVNRSQGLKNANDSLRGRIIEVSLADLNKDEEQSFRKIKLRVDEIQGRNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKI 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.324e-69
Identity = 130/190 (68.42%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWY+IKAP  F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLFCI FTKR PNQVK+T YAQ+SQIR IR+KM EIM   A+SC L  L +K I EVIGREIEKAT  IYPLQNV +RKVK+
Sbjct:   27 DWYNIKAPGTFAVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKL 216          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.912e-68
Identity = 126/190 (66.32%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAPS F VRN+GKTLVTRTQG K+AS+GLK RVFEVSL DL N+E+ ++RK RL +ED+QGKNVLTNF GM  TTDKLR+LV+KW TLIEA VDVKTTD + LRLFCIGFTKR PNQ+K+T YA++SQ R IR+KM ++M  + +  DLK  V K I + IG++IEK   SIYPL +VF+RKVK+
Sbjct:   28 DWYDVKAPSMFAVRNIGKTLVTRTQGKKLASDGLKGRVFEVSLADLQNDEQ-SFRKFRLISEDIQGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKV 216          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 127/190 (66.84%), Postives = 154/190 (81.05%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKL 217          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_BRARA1.234e-8381.1540S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_CHLRE5.930e-7874.2140S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_OSTLU7.249e-7671.5840S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_LENED2.578e-7370.5340S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_LACBS1.083e-7167.8940S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_POSPM1.415e-7170.0040S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_COPC72.413e-7167.3740S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_PYRTR1.324e-6968.4240S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_SUBDO1.912e-6866.3240S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_ASPCL3.261e-6866.8440S ribosomal protein S1 OS=Aspergillus clavatus G... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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