FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 77/192 (40.10%), Postives = 123/192 (64.06%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ + CYA+T  ++ +R ++  ++  + +  ++   V      ++   + K  + I PL+++ IRKVK+
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKV 219          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 77/192 (40.10%), Postives = 123/192 (64.06%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT D +TLRLF I FTK+  NQ+ + CYA+T  ++ +R ++  ++  + +  ++   V      ++   + K  + I PL+++ IRKVK+
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKV 219          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 78/192 (40.62%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRV 220          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 78/192 (40.62%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRV 220          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 78/192 (40.62%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+ + IRKV++
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRV 220          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 76/190 (40.00%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVK 680
            +WY++KAP+ F     GKT+VT++   +  +  L  R F+++  DL  N EEHA RK   R  +V+GK+ +  F GM+ T+DK++ ++RKWHTLIEA  D+   D   LR+F    TK+ P    +  Y +TS+ ++IR+ M +++  +    DL  +++K  AEVIG+ +EK  S IYPLQN  + KVK
Sbjct:   30 EWYNLKAPAIFPNNVCGKTMVTKSSNKQNLALLLIGRKFDINQADLTGNLEEHA-RKFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKTPTCTSKRVYCKTSEEKKIRKVMFDVIEEELKGEDLNKIMKKLAAEVIGKSVEKKGSLIYPLQNCCVIKVK 218          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 56/153 (36.60%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  222 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVK 680
            R ++V+  DL    +  +RK   +  D++G   +  F GM  T+DK +++++KWHTLIEA  D+   D    R+F +G T+R P  VK+TCY + S  ++IR+ M +++  + + CD++ +++K   E +G+ IE+  S I+PLQN  +RKVK
Sbjct:   16 RRYDVNQADLTGNNDVGHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVK 168          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 61/188 (32.45%), Postives = 107/188 (56.91%), Query Frame = 3
Query:  126 IKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            + AP  F  + +GKTL+ +       +  + +++++VSL D+L +EE +      ++  +      T F G+  T DK+ SL++KWHTLIE  V+ KT D + L+LF I  +K+  N   +T Y  +SQ R +RR++ +I++ +  + D+K  + +  +  I  +IE   S I+P+  V IRK+K+ E
Sbjct:   29 VYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKEEFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 66/192 (34.38%), Postives = 109/192 (56.77%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY + AP+ F+ R++G+T VT+T G ++A++ + HRV+EV+LGDL    E+ +   K  L+ + V     LTNF GM+ T  K  SL RK    I+ ++D+ TTD + LR+F I FT R   Q ++ C+ +   IR +R  + E +  +     +  LV K     +  ++ +A   I   ++V IR+VK+
Sbjct:   26 EWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTEALQKITMCRDVMIRRVKV 217          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METTP (30S ribosomal protein S3Ae OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 64/189 (33.86%), Postives = 100/189 (52.91%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY + AP  F    VG+TL             L  RV E +LGDL N       K+R + + V G    T F G   TTD +RSLV++  + I+A VDV T+D + +R+    FT      VKR   A+ +Q++ IR   R++++++A + DL  L+++ +   +  +I K   ++YPL+ V IRK +I
Sbjct:   17 WYKVLAPEMFGRTPVGETLANDPNK-------LLGRVIETTLGDLTNNFSKQNTKLRFKIDAVAGDTAYTKFIGHEMTTDYIRSLVKRRTSRIDAVVDVTTSDGYLVRVKPSCFT------VKR---ARANQVKAIREISRQVIISRAGNIDLNGLIQEVVLGKLSLDIYKDAKAVYPLRRVEIRKTEI 189          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A2_TRYCR1.209e-3840.1040S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR1.209e-3840.1040S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_LEIMA1.579e-3840.6340S ribosomal protein S3a OS=Leishmania major GN=L... [more]
RS3A2_LEIIN1.579e-3840.6340S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN1.579e-3840.6340S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_NOSCE3.407e-3340.0040S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_ENCCU1.638e-2736.6040S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]
RS3A_GUITH3.648e-2732.4540S ribosomal protein S3a OS=Guillardia theta PE=3... [more]
RS3A_GIALA2.365e-2634.3840S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]
RS3A_METTP5.102e-2133.8630S ribosomal protein S3Ae OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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