FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.043e-18
Identity = 63/191 (32.98%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+ E
Sbjct:   18 WYIIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLE 192          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 59/191 (30.89%), Postives = 96/191 (50.26%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            W+ + AP  F +  +G+T       +K+       R  E +L +L N+   ++ Y+K+  +   V G N  T FW    T + L SL R+  + IE  VDV T D + LR+  + FT R           +TSQ R IR  MR+I+V +A+S +    +++ +   +  EI K    IYP++ V IRK+++
Sbjct:   19 WFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVR---------RCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIEL 193          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 62/189 (32.80%), Postives = 90/189 (47.62%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+
Sbjct:   20 WYIIYAPDFFGGVEVGLTPADDP-------EKVMNRVVEVTLKDITGDFTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKV 192          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METKA (30S ribosomal protein S3Ae OS=Methanopyrus kandleri GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.176e-17
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIA----EVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WY I AP  F    VG+T            E +  RV E +LGD+L++    + K+  R  DV+G    + F G     D +RSLVR+  + I+  +DV T D + +R+  + FT R          A+TSQ R IR++M +++   A  CD    + + ++    E I  +I++A   IYP++   IRK ++ E
Sbjct:   11 WYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR---------RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLE 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 62/189 (32.80%), Postives = 90/189 (47.62%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+
Sbjct:   19 WYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKV 191          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 60/194 (30.93%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A +DVKT D + +R             VK TC+    A++SQI+ IR  M  I+  +A+  D ++ +++ I   +   I +    IYPL+ V IRK ++
Sbjct:   17 EWYNIEAPAYLNRAIVGNTMA----GDPSLLVG---RNIETTVGELTNDMTKNNTKVILRINNVVGDVATTDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQV 190          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.624e-17
Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY+I+AP       VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDVKT D + +R             VK TC+    A++SQ++ IR  M EI+  +AA  D ++ +++ I   +   I +    IYPL+ V IRK ++
Sbjct:   17 EWYNIEAPVYLNRAIVGNTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEV 190          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 60/194 (30.93%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY+I+AP+      VG T+     G      G   R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDV+T D F +R             VK TC+    A++SQ++ IR  M +I+  +A+  D ++ +++ I   +   I +    IYPL+ V IRK ++
Sbjct:   17 EWYNIEAPAYLNRVIVGTTMA----GDPSLLVG---RNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQV 190          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 56/189 (29.63%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY++ AP+ F    +G T            E L  RV E +L D+  +    + K+  +   + G   LT F G     D +RSLVR+  + I+   D+ T D + LR+  +  T    N         TSQ + IRR MRE +  +A+   L  LV++ ++  I  EI +    IYP++ V + K K+
Sbjct:   18 WYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPIRRVEVYKTKL 190          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 55/190 (28.95%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY + AP  F  + +G T            E +  RV E +L DL  +      K+  +  DV+G+N  T F G   +   +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR  MR+I+  +A   + K  + + +   +  EI K    IYP++   IRK+K+
Sbjct:   21 EWYVVYAPDFFGNKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPIKRAEIRKIKV 194          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_PYRFU4.043e-1832.9830S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_ARCFU6.896e-1830.8930S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_PYRHO9.006e-1832.8030S ribosomal protein S3Ae OS=Pyrococcus horikoshi... [more]
RS3A_METKA1.176e-1731.2830S ribosomal protein S3Ae OS=Methanopyrus kandler... [more]
RS3A_PYRAB2.620e-1732.8030S ribosomal protein S3Ae OS=Pyrococcus abyssi GN... [more]
RS3A_METBF5.838e-1730.9330S ribosomal protein S3Ae OS=Methanosarcina barke... [more]
RS3A_METAC7.624e-1731.9630S ribosomal protein S3Ae OS=Methanosarcina aceti... [more]
RS3A_METMA3.784e-1630.9330S ribosomal protein S3Ae OS=Methanosarcina mazei... [more]
RS3A_DESK13.784e-1629.6330S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_THEON5.464e-1528.9530S ribosomal protein S3Ae OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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