FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 53/181 (29.28%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  144 FRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIR 671
            F + N G T   + +  +  +  L  R F V+ GDL   +     ++ R  + +   V G N  + F GM  + +K+  ++RKWHTLIEA + + T D  T R+F    TK+  P+ +K   YA+ S+I+ IR+++ E  +      +++ LV+    E + +E E   + IYP+  + I+
Sbjct:   41 FPITNHGTTSHPKMRSKQDLTPFLVGRTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMIIK 219          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 54/190 (28.42%), Postives = 86/190 (45.26%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWY + AP  F    +G T            E +K R+ E +L D+  +    + K+  R  DV+G+N  T F G       +RSLVR+  T I+   +V T D + LR+  +    R           Q+SQ R +R  M +++  +A        V + +   +G E+ +    IYPL+   IRK+K+
Sbjct:   21 DWYIVYAPEFFGNVEIGLTPADEP-------EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPLKRAEIRKIKV 194          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAE (30S ribosomal protein S3Ae OS=Pyrobaculum aerophilum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            W+ + APS      +G   +      +  ++ L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  T D +RSLVRK  + + A  +VKT D   +R+  +G T         T    T+Q   +R+KM E +V +AA  D    +++ +   +  ++      I P++ V I K+K+
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLPIKLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGIT---------THRIGTAQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKV 199          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +W+ + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IRR +++I+  +A   +    V + +   I  EI K    IYP++   IRK+K+
Sbjct:   21 EWFVVYAPDFFGSKEIGLTPADEP-------EKVIGRVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEIRKIKV 194          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 57/192 (29.69%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  129 KAPSCFRVR---NVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            KA S F+V    N+GK  +  T  +++  E +K R+ + +LG++ N+    + K+  +  +V G    T F G   T D LRSLV++  + I+ +V V T DN  +RL   C  F +           A  +Q   +R  +   +VAQA + DL +LV   ++  I +++ K   ++YP + V I K K+ +
Sbjct:   15 KAKSWFKVYTPDNLGKAYIGDTIASEV--ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYPTRRVEIIKSKVEQ 193          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 53/190 (27.89%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            +WY + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR+ +++I+  +A   +    V + +   I  EI K    IYP++   +RK+K+
Sbjct:   21 EWYIVYAPDFFGSKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKV 194          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = 3
Query:  204 SEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            ++ L  R  EV+L D+  +  H   K+R +   V G N  T F G+  T D LRSL+R+  + I A  DVKT D + +R+  +G T         T    T+Q   IR++  E++  +AA  D+   +++ +   +  ++  A   I P++ V + K+K+
Sbjct:   49 AQKLVKRTLEVTLYDITKDISHLPIKLRFQIHRVDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVT---------THRVGTAQKSAIRKRFIEVVTKKAAEADIGQFLKEVLEGTLAADLFIAGKKIAPMRKVEVAKIKV 199          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 53/189 (28.04%), Postives = 89/189 (47.09%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY + APS      +G   +      +  ++ L  R  EVSL D+  +  H   K+R +   V G    T F G+  T D +RSLVRK  + + A VDVKT D + +R+  +  T              T+Q   IR+++ E +  +A+  D+   +++ +   +  E+  A   I PL+ V + K+K+
Sbjct:   27 WYTVYAPSY-----LGGVALAEVPAAE--AQKLLLRTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAH---------RIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPLRKVEVAKIKV 199          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 50/189 (26.46%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            W+ + APS      +G   +     ++   + L  R  EVSL D+  +  H   K+R +   V G   +T F G+  T D +RSLVRK  + + A V+VKT D + +R+  +  T         T    ++Q   +R++M +++  +A+  D+   +++ +  ++  ++  A   I PL+ V I K+K+
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPLRKVEIAKIKV 199          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 52/189 (27.51%), Postives = 86/189 (45.50%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY ++AP  F    +GKT            + +  R  E +LG+L N+      K+  +  +V   +  T F     T D LRSLVR+  + +EAY+ V TTD++ +++  +  T         T  A  SQ + IRR M +++   A     + L++  +   +   I      IYPL+ V I+K  +
Sbjct:   15 WYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTL 187          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_ENTBH5.464e-1529.2840S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_THESM1.217e-1428.4230S ribosomal protein S3Ae OS=Thermococcus sibiric... [more]
RS3A_PYRAE1.217e-1428.0430S ribosomal protein S3Ae OS=Pyrobaculum aerophil... [more]
RS3A_THEGJ2.076e-1428.4230S ribosomal protein S3Ae OS=Thermococcus gammato... [more]
RS3A_METB62.076e-1429.6930S ribosomal protein S3Ae OS=Methanoregula boonei... [more]
RS3A_PYRKO2.712e-1427.8930S ribosomal protein S3Ae OS=Pyrococcus kodakarae... [more]
RS3A_PYRCJ4.626e-1429.3830S ribosomal protein S3Ae OS=Pyrobaculum calidifo... [more]
RS3A_THENV1.030e-1328.0430S ribosomal protein S3Ae OS=Thermoproteus neutro... [more]
RS3A_PYRIL1.030e-1326.4630S ribosomal protein S3Ae OS=Pyrobaculum islandic... [more]
RS3A_HALMA1.758e-1327.5130S ribosomal protein S3Ae OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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