FC930924
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13 Identity = 55/191 (28.80%), Postives = 92/191 (48.17%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WY IK+P F +G T ++ LK RV E ++ +L + Y K++ + + V G T F G TTD +RS++R+ + ++A V V+T D + L++ + T R A++SQ + +R+ + E + A+ + LVE + I EI IYPL+ V I K ++ E Sbjct: 18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLE 192
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13 Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY + AP F +G+T E + R + +LG+L N+ K+ + DV T+F T D LRSL R+ + ++A+V V TTD++ +++ + +T T A SQ + IR M +++ AA L++ + + I +IYPL+ V I+K ++ Sbjct: 15 WYTVMAPEIFDRAELGETPADEP-------EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLRRVEIQKTRL 187
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13 Identity = 53/189 (28.04%), Postives = 85/189 (44.97%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F +G T E + R EV+LGD+ ++ K+ + DV T F D LRSL+R+ + I+A + V+TTD++ ++L + FT T A SQ + IRR M +++ A L++ I + I +IYPL+ V ++K+ + Sbjct: 15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLRRVEVKKLTL 187
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12 Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WY+I P F +G+T L R+ E+SL DL NE ++ + + V G N +T F G + T + L+S +R+ + I +DV+T D F +R+ + T V+ Y +T +IR KM +I+ A V + +G +I ++PL+ V I K ++ E Sbjct: 24 WYNIYTPQSFGGDVIGQTPANDPSA-------LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLKRVEIFKSEVLE 198
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12 Identity = 54/189 (28.57%), Postives = 88/189 (46.56%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 W+ I AP F G+ ++ T A++ L +V E +L DL + Y + R V+G +LT F G + D +RSLVR+ + I+A DV T D + LR+ + T T A SQ +IR+ + I+ +A+ V+ + + +I + IYPL+ V + K K+ Sbjct: 16 WFTIVAPKTF-----GEVVLGTTPAFD-ANQALNRKV-ETTLYDLTGDYSLVYVHLYFRVIGVEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT---------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKL 188
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12 Identity = 52/189 (27.51%), Postives = 89/189 (47.09%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY IK P F + +G+T + L R EV++ +L + Y K+R ++V G T F G TTD +RS++R+ + I+A VKT D+ ++L + T R A++SQ + +R+ + +++ AA L++ + + E+ IYPL+ V I K K+ Sbjct: 19 WYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPLKRVEIIKSKV 191
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12 Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL+ V I K ++ E Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12 Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL+ V I K ++ E Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12 Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 W+ + AP +G + T+ +E L R EVSL D+ + H K++ + V+G LT F G+ + D ++SLVRK + + A +VKT D +R+ + T T+Q +R+K+ E ++ +A+ D +++ + + ++ A I PL+ V K+K+ Sbjct: 27 WFAVHAPPY-----LGGVFLAEVPATE--AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKV 199
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIY (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189 The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bpback to top |