FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 55/191 (28.80%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WY IK+P  F    +G T       ++     LK RV E ++ +L  +    Y K++ + + V G    T F G   TTD +RS++R+  + ++A V V+T D + L++  +  T R          A++SQ + +R+ + E +   A+    + LVE  +   I  EI      IYPL+ V I K ++ E
Sbjct:   18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLE 192          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY + AP  F    +G+T            E +  R  + +LG+L N+      K+  +  DV      T+F     T D LRSL R+  + ++A+V V TTD++ +++  + +T         T  A  SQ + IR  M +++   AA      L++  +   +   I     +IYPL+ V I+K ++
Sbjct:   15 WYTVMAPEIFDRAELGETPADEP-------EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLRRVEIQKTRL 187          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 53/189 (28.04%), Postives = 85/189 (44.97%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F    +G T            E +  R  EV+LGD+  ++     K+  +  DV      T F       D LRSL+R+  + I+A + V+TTD++ ++L  + FT         T  A  SQ + IRR M +++   A       L++  I   +   I     +IYPL+ V ++K+ +
Sbjct:   15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLRRVEVKKLTL 187          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WY+I  P  F    +G+T              L  R+ E+SL DL NE      ++  + + V G N +T F G + T + L+S +R+  + I   +DV+T D F +R+  +  T      V+   Y +T    +IR KM +I+   A        V   +   +G +I      ++PL+ V I K ++ E
Sbjct:   24 WYNIYTPQSFGGDVIGQTPANDPSA-------LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLKRVEIFKSEVLE 198          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 54/189 (28.57%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            W+ I AP  F     G+ ++  T     A++ L  +V E +L DL  +    Y  +  R   V+G  +LT F G   + D +RSLVR+  + I+A  DV T D + LR+  +  T         T  A  SQ  +IR+ +  I+  +A+       V+  +   +  +I +    IYPL+ V + K K+
Sbjct:   16 WFTIVAPKTF-----GEVVLGTTPAFD-ANQALNRKV-ETTLYDLTGDYSLVYVHLYFRVIGVEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT---------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKL 188          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 52/189 (27.51%), Postives = 89/189 (47.09%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY IK P  F  + +G+T            + L  R  EV++ +L  +    Y K+R   ++V G    T F G   TTD +RS++R+  + I+A   VKT D+  ++L  +  T R          A++SQ + +R+ + +++   AA      L++  +   +  E+      IYPL+ V I K K+
Sbjct:   19 WYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPLKRVEIIKSKV 191          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL+ V I K ++ E
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL+ V I K ++ E
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            W+ + AP       +G   +     T+  +E L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  + D ++SLVRK  + + A  +VKT D   +R+  +  T              T+Q   +R+K+ E ++ +A+  D    +++ +   +  ++  A   I PL+ V   K+K+
Sbjct:   27 WFAVHAPPY-----LGGVFLAEVPATE--AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKV 199          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIY (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_METTH2.296e-1328.8030S ribosomal protein S3Ae OS=Methanobacterium the... [more]
RS3A_NATPD8.723e-1326.4630S ribosomal protein S3Ae OS=Natronomonas pharaon... [more]
RS3A_HALWD8.723e-1328.0430S ribosomal protein S3Ae OS=Haloquadratum walsby... [more]
RS3A_METVS1.488e-1227.2330S ribosomal protein S3Ae OS=Methanococcus vannie... [more]
RS3A_SULTO1.943e-1228.5730S ribosomal protein S3Ae OS=Sulfolobus tokodaii ... [more]
RS3A_METS32.538e-1227.5130S ribosomal protein S3Ae OS=Methanobrevibacter s... [more]
RS3A_METM73.315e-1228.8030S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METM63.315e-1228.8030S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_PYRAR7.385e-1225.4030S ribosomal protein S3Ae OS=Pyrobaculum arsenati... [more]
RS3A_SULIY1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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