FC930924
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIN (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIM (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIL (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIK (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIA (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F ++G T VT+T G ++ E +L DL + Y + + +G ++T F G + D LRSL+R+ + + + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +AT IYPL+ I K K+ Sbjct: 17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_HALLT (30S ribosomal protein S3Ae OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11 Identity = 53/189 (28.04%), Postives = 84/189 (44.44%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY + AP F + +G+TL + + R +LG+L + K+ + DV T F T D LRSLVR+ + +EA + V TTD++ +R+ + T T A SQ + IRR M + + A A +S V+ + + I IYPL+ V I+K+ + Sbjct: 15 WYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLTFKITDVGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT---------TKKADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKLIYPLRRVEIQKLTL 187
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULAC (30S ribosomal protein S3Ae OS=Sulfolobus acidocaldarius GN=rps3ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11 Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY I AP F G+ L+ T I ++ L ++ EV+L DL + H Y KI ++ G + T F+G + D +RSLVR+ + I A VDV T D G+ R+ V T A SQ IR+ + +I +A D V+ I + +I + IYPL+ V I K K+ Sbjct: 18 WYVITAPKVF-----GEALLGSTPAYDI-NKALSRKI-EVTLYDLTGDYNLVYIHLYFKI---LGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKD---------GYMLRVKGLVLTTYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKL 191
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METMP (30S ribosomal protein S3Ae OS=Methanococcus maripaludis GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11 Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A V+V+T D F +R+ + T A+ +IR +M +I+ A V + +G +I ++PL+ V I K ++ E Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAN--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRVRMEQIIKEMAKETPFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVIE 198
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM5 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11 Identity = 53/191 (27.75%), Postives = 85/191 (44.50%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F +R+ + T A+ +IR M +I+ A V + +G +I ++PL+ V I K ++ E Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRINMEQIIRHMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_STAMF (30S ribosomal protein S3Ae OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11 Identity = 51/191 (26.70%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLK--HRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683 WY++ AP F G ++ GT A + LK RV E +L D+ + + ++ + DV+ +T F G + D ++SL+R+ + I+ +V T D + LRL I T + +TSQ R IR+ M E + + L L+ + + + I + IYP++ V + K K+ Sbjct: 18 WYEVIAPPVF-----GNIVI----GTTPADDPLKLIGRVMETTLYDITGDITQVHVRLYFQIIDVKENKAITRFKGHELSRDYIKSLIRRKSSKIQGIFNVVTKDGYHLRLTIIALT---------SYRCKTSQKRAIRKIMEEYVKERVPQLTLDELIHEMVFGKMSAVIAERARKIYPIRKVEVYKSKL 190 The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bpback to top |