FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:42..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIN (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIM (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIL (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIK (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULIA (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 52/192 (27.08%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTL---VTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F   ++G T    VT+T G ++          E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+
Sbjct:   17 WYSIIAPKVFGEVSLGSTPAYDVTQTIGRRV----------ETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKV 189          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_HALLT (30S ribosomal protein S3Ae OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 53/189 (28.04%), Postives = 84/189 (44.44%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY + AP  F  + +G+TL           + +  R    +LG+L  +      K+  +  DV      T F     T D LRSLVR+  + +EA + V TTD++ +R+  +  T         T  A  SQ + IRR M + + A A     +S V+  +   +   I      IYPL+ V I+K+ +
Sbjct:   15 WYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLTFKITDVGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT---------TKKADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKLIYPLRRVEIQKLTL 187          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SULAC (30S ribosomal protein S3Ae OS=Sulfolobus acidocaldarius GN=rps3ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY I AP  F     G+ L+  T    I ++ L  ++ EV+L DL  +      H Y KI     ++ G  + T F+G   + D +RSLVR+  + I A VDV T D         G+  R+   V  T  A  SQ   IR+ + +I   +A   D    V+  I   +  +I +    IYPL+ V I K K+
Sbjct:   18 WYVITAPKVF-----GEALLGSTPAYDI-NKALSRKI-EVTLYDLTGDYNLVYIHLYFKI---LGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKD---------GYMLRVKGLVLTTYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKL 191          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METMP (30S ribosomal protein S3Ae OS=Methanococcus maripaludis GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 52/191 (27.23%), Postives = 86/191 (45.03%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A V+V+T D F +R+  +  T            A+     +IR +M +I+   A        V   +   +G +I      ++PL+ V I K ++ E
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAN--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRVRMEQIIKEMAKETPFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVIE 198          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_METM5 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 53/191 (27.75%), Postives = 85/191 (44.50%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKIPE 689
            WYDI  P  F     G  ++ +T     A+  L  R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F +R+  +  T            A+     +IR  M +I+   A        V   +   +G +I      ++PL+ V I K ++ E
Sbjct:   24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRINMEQIIRHMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVLE 198          
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_STAMF (30S ribosomal protein S3Ae OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 51/191 (26.70%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  117 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLK--HRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            WY++ AP  F     G  ++    GT  A + LK   RV E +L D+  +    + ++  +  DV+    +T F G   + D ++SL+R+  + I+   +V T D + LRL  I  T         +   +TSQ R IR+ M E +  +     L  L+ + +   +   I +    IYP++ V + K K+
Sbjct:   18 WYEVIAPPVF-----GNIVI----GTTPADDPLKLIGRVMETTLYDITGDITQVHVRLYFQIIDVKENKAITRFKGHELSRDYIKSLIRRKSSKIQGIFNVVTKDGYHLRLTIIALT---------SYRCKTSQKRAIRKIMEEYVKERVPQLTLDELIHEMVFGKMSAVIAERARKIYPIRKVEVYKSKL 190          
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_SULIN1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIM1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIL1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIK1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIA1.260e-1127.0830S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_HALLT1.645e-1128.0430S ribosomal protein S3Ae OS=Halorubrum lacusprof... [more]
RS3A_SULAC2.806e-1131.0930S ribosomal protein S3Ae OS=Sulfolobus acidocald... [more]
RS3A_METMP2.806e-1127.2330S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METM53.665e-1127.7530S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_STAMF4.787e-1126.7030S ribosomal protein S3Ae OS=Staphylothermus mari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
back to top