FC930924

Overview
NameFC930924
Unique NameFC930924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.160e-65
Identity = 124/190 (65.26%), Postives = 151/190 (79.47%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            D Y +KAPS F  R+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I EVIGREIEKAT  IYPLQ+V IRKVK+
Sbjct:   28 DEYSVKAPSTFANRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQGDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKL 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 121/190 (63.68%), Postives = 153/190 (80.53%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKM 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 1.979e-65
Identity = 120/190 (63.16%), Postives = 153/190 (80.53%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RV+EVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTKR  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVYEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKM 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.979e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKM 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 1.979e-65
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKM 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-65
Identity = 123/190 (64.74%), Postives = 155/190 (81.58%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWY+IKAPS F  R+VGKTLV R+ G ++A++ LK RV EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G +FT+DKLRSLVRKW TLIEA V VKT+D++ LRLF IGFTKR  NQVK+T YAQTSQI QIR+KM +I+V +A++  L  L  K I EVIGREIEKAT +IYPLQNV+IRKVK+
Sbjct:   28 DWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKL 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-65
Identity = 118/190 (62.11%), Postives = 154/190 (81.05%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DWYD+KAP+ F +RN+GKTLV+RTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L +EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVSRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLISEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKM 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-65
Identity = 118/190 (62.11%), Postives = 154/190 (81.05%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKL 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-65
Identity = 118/190 (62.11%), Postives = 154/190 (81.05%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKL 217
[Close]
BLAST of FC930924 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-65
Identity = 118/190 (62.11%), Postives = 154/190 (81.05%), Query Frame = 3 
Query:  114 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 683
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKL 217
The following BLAST results are available for this feature:
BLAST of FC930924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
RS3A_EMENI1.160e-6565.2640S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3AA_XENLA1.515e-6563.6840S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_TETNG1.979e-6563.1640S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_SOLSE1.979e-6562.6340S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_DANRE1.979e-6562.6340S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_YARLI2.584e-6564.7440S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_SALSA2.584e-6562.1140S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_CANDC2.584e-6562.1140S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW2.584e-6562.1140S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL2.584e-6562.1140S ribosomal protein S1 OS=Candida albicans GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC34110E05EF PostHarvP1 Citrus clementina cDNA clone C34110E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930924 ID=FC930924; Name=FC930924; organism=Citrus clementina; type=EST; length=689bp
GGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAAC
AAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCC
GTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCG
TCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATT
GCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCT
TCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAG
ATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACT
ACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGC
TTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCA
TTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCA
CAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGT
TGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTG
CTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCC
TTACAAAATGTGTTCATTCGCAAAGTGAAGATCCCTGAA
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