FC930926

Overview
NameFC930926
Unique NameFC930926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15061 contig Ccv1_Contig15061:21..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  253 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVI 714
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL    P +
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFL 155          
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  250 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVI 714
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LS+VGN+ + +TL YIVFV L T P++
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPML 170          
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.190e-23
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  262 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVI 714
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG   N +TL YI  +L  + P++
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIV 163          
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 50/163 (30.67%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  226 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVI 714
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G++ +  TL YI  +L  T P +
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPAL 182          
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  262 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVI 714
            +  +LG G  AD+ LW++K  S   L  AT  W L E +E  L+ L+C I +L + +LFLW+     F  + PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G++ + +T+ YI  V   T PV+
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVV 151          
BLAST of FC930926 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 41/145 (28.28%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  295 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTCPVIMRVRG 729
            DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    ++K  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN  +F T  +I  V+  T P +    G
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYG 162          
The following BLAST results are available for this feature:
BLAST of FC930926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLJ_ARATH3.928e-2536.36Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH2.546e-2437.50Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH8.190e-2335.76Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH2.383e-2230.67Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.821e-1532.89Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH3.119e-1428.28Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34110E07EF PostHarvP1 Citrus clementina cDNA clone C34110E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930926 ID=FC930926; Name=FC930926; organism=Citrus clementina; type=EST; length=744bp
GGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATTTTT
CAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGGAAC
ATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATCACG
GATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGACAA
GCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCGGAA
GAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGATATT
TTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGCCAC
TGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTTTGG
TCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCCAAT
GCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTACACT
TCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAATCA
ACCGAGCCTTGGCTGTCCTGCGGGAAATTGCATCTGGAAGGGACTTGAAG
AAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGGTAA
TTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTACACA
CGTGCCCCGTGATTATGAGAGTACGAGGGACAGATTGATCATTT
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