FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 109/182 (59.89%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N+   E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTD + LR+FCIGFT +     ++TCYAQ SQI++IRRKM  I+     S DLK +V K + + I ++IEK    IYPL
Sbjct:   29 DWYDVKAPNMFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPL 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 100/180 (55.56%), Postives = 141/180 (78.33%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY +KAP  F VRN G+TLV++TQGTK+A++GL+ R++EVSL DL  +E+ +YRKI+L  ED+QG+N LTNF G + T DKL SL+RK ++LIEA+ DVKTTD +TLR+FCIG+TKR P Q+K TCY ++S+ R +RRKM E+M  +A++  ++ +V+K I E IG+EIEK   S++PL
Sbjct:   28 EWYTLKAPVMFHVRNFGQTLVSKTQGTKLATDGLRGRIYEVSLADLNADEDQSYRKIKLCCEDIQGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N+   E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTDN+ LR+FCIGFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I ++IEK    +YPL
Sbjct:   29 DWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPL 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 110/182 (60.44%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F+ R VGKTLV RTQGTKIAS+GLK RVFEVSL DL NE   E ++RK +L AE V G++VLTNF GM  TTDKLRS+V+KW TLIE  VDVKTTD F LR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLK +VEK + + I ++IEK    +YPL
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPL 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I FT++  NQVKRT YAQ+S IRQIR+ + EI+  +  +  L  L  K I EVI +EIE  T  I+PL
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55
Identity = 103/180 (57.22%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYD+KAP  F VRN GKTLV +T G K+A++GLK R++EV+L DL N+E+ A++KI+L  + +  K+  T+F G++ T DKL SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPL
Sbjct:   28 EWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDGLKGRIYEVNLADLNNDEDQAHKKIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 103/180 (57.22%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYD+KAP  F VRN GKTLV +T G K+A++GLK R++EV+L DL N+E+ A++KI+L  + +  K+  T+F G++ T DKL SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPL
Sbjct:   28 EWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDGLKGRIYEVNLADLNNDEDQAHKKIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 112/180 (62.22%), Postives = 139/180 (77.22%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F VR+VGKT+V RT G K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEK T  IYPL
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPL 206          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 112/180 (62.22%), Postives = 139/180 (77.22%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F VR+VGKT+V RT G K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEK T  IYPL
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPL 206          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 108/182 (59.34%), Postives = 133/182 (73.08%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAPS F  R VG TLV RTQGTKIASEGLK RVFEVSL DL    + E ++RK RL AEDVQG+NVL NF GM+ TTDKLR +V+KW TLIEA +DVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEK    IYPL
Sbjct:   29 DWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPL 210          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_AEDAE1.888e-5559.8940S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_BABBO2.466e-5555.5640S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A_CULQU3.221e-5558.7940S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_ANOGA3.221e-5560.4440S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_KLULA4.207e-5558.8940S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_PLAVI7.176e-5557.2240S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_PLAKH9.372e-5557.2240S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_COCP79.372e-5562.2240S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM9.372e-5562.2240S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A_BOMMA9.372e-5559.3440S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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