FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            W+ + AP  F +  +G+T       +K+       R  E +L +L N+   ++ Y+K+  +   V G N  T FW    T + L SL R+  + IE  VDV T D + LR+  + FT R           +TSQ R IR  MR+I+V +A+S +    +++ +   +  EI K    IYP+
Sbjct:   19 WFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVR---------RCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPI 183          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 58/179 (32.40%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY I AP  F    VG T            E + +RV EV+L D+  +   ++ K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL
Sbjct:   18 WYIIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPL 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METKA (30S ribosomal protein S3Ae OS=Methanopyrus kandleri GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 56/183 (30.60%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIA----EVIGREIEKGTSSIYPL 694
            WY I AP  F    VG+T            E +  RV E +LGD+L++    + K+  R  DV+G    + F G     D +RSLVR+  + I+  +DV T D + +R+  + FT R          A+TSQ R IR++M +++   A  CD    + + ++    E I  +I++    IYP+
Sbjct:   11 WYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR---------RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPI 177          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL
Sbjct:   20 WYIIYAPDFFGGVEVGLTPADDP-------EKVMNRVVEVTLKDITGDFTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPL 182          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 55/184 (29.89%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY+I+AP+      VG T+             L  R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A +DVKT D + +R             VK TC+    A++SQI+ IR  M  I+  +A+  D ++ +++ I   +   I +    IYPL
Sbjct:   17 EWYNIEAPAYLNRAIVGNTMAGDPSL-------LVGRNIETTVGELTNDMTKNNTKVILRINNVVGDVATTDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPL 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 52/175 (29.71%), Postives = 90/175 (51.43%), Query Frame = 2
Query:  185 FRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            F + N G T   + +  +  +  L  R F V+ GDL   +     ++ R  + +   V G N  + F GM  + +K+  ++RKWHTLIEA + + T D  T R+F    TK+  P+ +K   YA+ S+I+ IR+++ E  +      +++ LV+    E + +E E   + IYP+
Sbjct:   41 FPITNHGTTSHPKMRSKQDLTPFLVGRTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPI 213          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 57/184 (30.98%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY+I+AP       VG T+             L  R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDVKT D + +R             VK TC+    A++SQ++ IR  M EI+  +AA  D ++ +++ I   +   I +    IYPL
Sbjct:   17 EWYNIEAPVYLNRAIVGNTMAGDPSL-------LVGRNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPL 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY I AP  F    VG T            E + +RV EV+L D+  +    + K+  +  DV+G+N  T F GM      +RSLVR+  T I+   ++ T D + LR+  +    R           QTSQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL
Sbjct:   19 WYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPL 181          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY++ AP+ F    +G T            E L  RV E +L D+  +    + K+  +   + G   LT F G     D +RSLVR+  + I+   D+ T D + LR+  +  T    N         TSQ + IRR MRE +  +A+   L  LV++ ++  I  EI +    IYP+
Sbjct:   18 WYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPI 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY+I+AP+      VG T+             L  R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDV+T D F +R             VK TC+    A++SQ++ IR  M +I+  +A+  D ++ +++ I   +   I +    IYPL
Sbjct:   17 EWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPL 180          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_ARCFU1.463e-1530.3930S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_PYRFU5.558e-1532.4030S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_METKA5.558e-1530.6030S ribosomal protein S3Ae OS=Methanopyrus kandler... [more]
RS3A_PYRHO7.259e-1532.4030S ribosomal protein S3Ae OS=Pyrococcus horikoshi... [more]
RS3A_METBF1.238e-1429.8930S ribosomal protein S3Ae OS=Methanosarcina barke... [more]
RS3A_ENTBH1.238e-1429.7140S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_METAC1.617e-1430.9830S ribosomal protein S3Ae OS=Methanosarcina aceti... [more]
RS3A_PYRAB2.112e-1432.4030S ribosomal protein S3Ae OS=Pyrococcus abyssi GN... [more]
RS3A_DESK16.145e-1429.6130S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_METMA8.026e-1429.8930S ribosomal protein S3Ae OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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