FC930930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15 Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 W+ + AP F + +G+T +K+ R E +L +L N+ ++ Y+K+ + V G N T FW T + L SL R+ + IE VDV T D + LR+ + FT R +TSQ R IR MR+I+V +A+S + +++ + + EI K IYP+ Sbjct: 19 WFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVR---------RCKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPI 183
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 58/179 (32.40%), Postives = 84/179 (46.93%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY I AP F VG T E + +RV EV+L D+ + ++ K+ + DV+G+N T F GM +RSLVR+ T I+ ++ T D + LR+ + R QTSQ R IR+ M+EI+ +A + K V + + I EI K IYPL Sbjct: 18 WYIIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPL 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METKA (30S ribosomal protein S3Ae OS=Methanopyrus kandleri GN=rps3Ae PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 56/183 (30.60%), Postives = 89/183 (48.63%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIA----EVIGREIEKGTSSIYPL 694 WY I AP F VG+T E + RV E +LGD+L++ + K+ R DV+G + F G D +RSLVR+ + I+ +DV T D + +R+ + FT R A+TSQ R IR++M +++ A CD + + ++ E I +I++ IYP+ Sbjct: 11 WYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHHIKVFFRIYDVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFTTR---------RAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPI 177
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRHO (30S ribosomal protein S3Ae OS=Pyrococcus horikoshii GN=rps3Ae PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY I AP F VG T E + +RV EV+L D+ + + K+ + DV+G+N T F GM +RSLVR+ T I+ ++ T D + LR+ + R QTSQ R IR+ M+EI+ +A + K V + + I EI K IYPL Sbjct: 20 WYIIYAPDFFGGVEVGLTPADDP-------EKVMNRVVEVTLKDITGDFTKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYRLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPL 182
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14 Identity = 55/184 (29.89%), Postives = 90/184 (48.91%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +WY+I+AP+ VG T+ L R E ++G+L N+ K+ LR +V G T+ G TTD +RS+V++ + I+A +DVKT D + +R VK TC+ A++SQI+ IR M I+ +A+ D ++ +++ I + I + IYPL Sbjct: 17 EWYNIEAPAYLNRAIVGNTMAGDPSL-------LVGRNIETTVGELTNDMTKNNTKVILRINNVVGDVATTDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPL 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14 Identity = 52/175 (29.71%), Postives = 90/175 (51.43%), Query Frame = 2 Query: 185 FRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 F + N G T + + + + L R F V+ GDL + ++ R + + V G N + F GM + +K+ ++RKWHTLIEA + + T D T R+F TK+ P+ +K YA+ S+I+ IR+++ E + +++ LV+ E + +E E + IYP+ Sbjct: 41 FPITNHGTTSHPKMRSKQDLTPFLVGRTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPI 213
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14 Identity = 57/184 (30.98%), Postives = 90/184 (48.91%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +WY+I+AP VG T+ L R E ++G+L N+ K+ LR +V G T+ G TTD +RS+V++ + I+A VDVKT D + +R VK TC+ A++SQ++ IR M EI+ +AA D ++ +++ I + I + IYPL Sbjct: 17 EWYNIEAPVYLNRAIVGNTMAGDPSL-------LVGRNVETTVGELTNDMTKNNTKVILRINNVVGDIATTDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPL 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14 Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY I AP F VG T E + +RV EV+L D+ + + K+ + DV+G+N T F GM +RSLVR+ T I+ ++ T D + LR+ + R QTSQ R IR+ M+EI+ +A + K V + + I EI K IYPL Sbjct: 19 WYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPL 181
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14 Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY++ AP+ F +G T E L RV E +L D+ + + K+ + + G LT F G D +RSLVR+ + I+ D+ T D + LR+ + T N TSQ + IRR MRE + +A+ L LV++ ++ I EI + IYP+ Sbjct: 18 WYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPI 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14 Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +WY+I+AP+ VG T+ L R E ++G+L N+ K+ LR +V G T+ G TTD +RS+V++ + I+A VDV+T D F +R VK TC+ A++SQ++ IR M +I+ +A+ D ++ +++ I + I + IYPL Sbjct: 17 EWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPL 180 The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 186
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bpback to top |