FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  170 KAPSCFRVR---NVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYP 691
            KA S F+V    N+GK  +  T  +++  E +K R+ + +LG++ N+    + K+  +  +V G    T F G   T D LRSLV++  + I+ +V V T DN  +RL   C  F +           A  +Q   +R  +   +VAQA + DL +LV   ++  I +++ K   ++YP
Sbjct:   15 KAKSWFKVYTPDNLGKAYIGDTIASEV--ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYP 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAE (30S ribosomal protein S3Ae OS=Pyrobaculum aerophilum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            W+ + APS      +G   +A     +  ++ L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  T D +RSLVRK  + + A  +VKT D   +R+  +G T         T    T+Q   +R+KM E +V +AA  D    +++ +   +  ++      I P+
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLPIKLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGIT---------THRIGTAQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPM 189          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 51/180 (28.33%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY + AP  F  + +G T            E +  RV E +L DL  +      K+  +  DV+G+N  T F G   +   +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR  MR+I+  +A   + K  + + +   +  EI K    IYP+
Sbjct:   21 EWYVVYAPDFFGNKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPI 184          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 50/180 (27.78%), Postives = 79/180 (43.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWY + AP  F    +G T            E +K R+ E +L D+  +    + K+  R  DV+G+N  T F G       +RSLVR+  T I+   +V T D + LR+  +    R           Q+SQ R +R  M +++  +A        V + +   +G E+ +    IYPL
Sbjct:   21 DWYIVYAPEFFGNVEIGLTPADEP-------EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPL 184          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 48/179 (26.82%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            W+ + AP       +G   +A     +  ++ L  R  EV+L D+  +  H   K+R +   V G N  T F G+  T D LRSL+R+  + I A  DVKT D + +R+  +G T         T    T+Q   IR++  E++  +AA  D+   +++ +   +  ++      I P+
Sbjct:   27 WFSVYAPPY-----LGGVFLAEVPAAE--AQKLVKRTLEVTLYDITKDISHLPIKLRFQIHRVDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVT---------THRVGTAQKSAIRKRFIEVVTKKAAEADIGQFLKEVLEGTLAADLFIAGKKIAPM 189          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY IK+P  F    +G T       ++     LK RV E ++ +L  +    Y K++ + + V G    T F G   TTD +RS++R+  + ++A V V+T D + L++  +  T R          A++SQ + +R+ + E +   A+    + LVE  +   I  EI      IYPL
Sbjct:   18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPL 180          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 49/179 (27.37%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY ++AP  F    +GKT            + +  R  E +LG+L N+      K+  +  +V   +  T F     T D LRSLVR+  + +EAY+ V TTD++ +++  +  T         T  A  SQ + IRR M +++   A     + L++  +   +   I      IYPL
Sbjct:   15 WYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPL 177          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +W+ + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IRR +++I+  +A   +    V + +   I  EI K    IYP+
Sbjct:   21 EWFVVYAPDFFGSKEIGLTPADEP-------EKVIGRVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPI 184          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WY + AP  F  + +G T            E +  RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR+ +++I+  +A   +    V + +   I  EI K    IYP+
Sbjct:   21 EWYIVYAPDFFGSKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPI 184          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 50/179 (27.93%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY + APS      +G   +A     +  ++ L  R  EVSL D+  +  H   K+R +   V G    T F G+  T D +RSLVRK  + + A VDVKT D + +R+  +  T              T+Q   IR+++ E +  +A+  D+   +++ +   +  E+      I PL
Sbjct:   27 WYTVYAPSY-----LGGVALAEVPAAE--AQKLLLRTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAH---------RIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPL 189          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_METB61.159e-1229.6130S ribosomal protein S3Ae OS=Methanoregula boonei... [more]
RS3A_PYRAE2.582e-1227.9330S ribosomal protein S3Ae OS=Pyrobaculum aerophil... [more]
RS3A_THEON4.404e-1228.3330S ribosomal protein S3Ae OS=Thermococcus onnurin... [more]
RS3A_THESM9.811e-1227.7830S ribosomal protein S3Ae OS=Thermococcus sibiric... [more]
RS3A_PYRCJ9.811e-1226.8230S ribosomal protein S3Ae OS=Pyrobaculum calidifo... [more]
RS3A_METTH9.811e-1228.4930S ribosomal protein S3Ae OS=Methanobacterium the... [more]
RS3A_HALMA9.811e-1227.3730S ribosomal protein S3Ae OS=Haloarcula marismort... [more]
RS3A_THEGJ1.674e-1127.7830S ribosomal protein S3Ae OS=Thermococcus gammato... [more]
RS3A_PYRKO1.674e-1127.7830S ribosomal protein S3Ae OS=Pyrococcus kodakarae... [more]
RS3A_THENV2.186e-1127.9330S ribosomal protein S3Ae OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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