FC930930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12 Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 2 Query: 170 KAPSCFRVR---NVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYP 691 KA S F+V N+GK + T +++ E +K R+ + +LG++ N+ + K+ + +V G T F G T D LRSLV++ + I+ +V V T DN +RL C F + A +Q +R + +VAQA + DL +LV ++ I +++ K ++YP Sbjct: 15 KAKSWFKVYTPDNLGKAYIGDTIASEV--ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYP 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAE (30S ribosomal protein S3Ae OS=Pyrobaculum aerophilum GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12 Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 W+ + APS +G +A + ++ L R EVSL D+ + H K++ + V+G LT F G+ T D +RSLVRK + + A +VKT D +R+ +G T T T+Q +R+KM E +V +AA D +++ + + ++ I P+ Sbjct: 27 WFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLPIKLKFQIHRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAVLGIT---------THRIGTAQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPM 189
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12 Identity = 51/180 (28.33%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +WY + AP F + +G T E + RV E +L DL + K+ + DV+G+N T F G + +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IR MR+I+ +A + K + + + + EI K IYP+ Sbjct: 21 EWYVVYAPDFFGNKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPI 184
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12 Identity = 50/180 (27.78%), Postives = 79/180 (43.89%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 DWY + AP F +G T E +K R+ E +L D+ + + K+ R DV+G+N T F G +RSLVR+ T I+ +V T D + LR+ + R Q+SQ R +R M +++ +A V + + +G E+ + IYPL Sbjct: 21 DWYIVYAPEFFGNVEIGLTPADEP-------EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPL 184
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRCJ (30S ribosomal protein S3Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12 Identity = 48/179 (26.82%), Postives = 83/179 (46.37%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 W+ + AP +G +A + ++ L R EV+L D+ + H K+R + V G N T F G+ T D LRSL+R+ + I A DVKT D + +R+ +G T T T+Q IR++ E++ +AA D+ +++ + + ++ I P+ Sbjct: 27 WFSVYAPPY-----LGGVFLAEVPAAE--AQKLVKRTLEVTLYDITKDISHLPIKLRFQIHRVDGLNASTRFKGLELTRDYLRSLIRRGTSKIMAITDVKTKDGWVMRVAVLGVT---------THRVGTAQKSAIRKRFIEVVTKKAAEADIGQFLKEVLEGTLAADLFIAGKKIAPM 189
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12 Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY IK+P F +G T ++ LK RV E ++ +L + Y K++ + + V G T F G TTD +RS++R+ + ++A V V+T D + L++ + T R A++SQ + +R+ + E + A+ + LVE + I EI IYPL Sbjct: 18 WYVIKSPKLFGENEIGTT------PSRDPDFLLKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPL 180
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12 Identity = 49/179 (27.37%), Postives = 80/179 (44.69%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY ++AP F +GKT + + R E +LG+L N+ K+ + +V + T F T D LRSLVR+ + +EAY+ V TTD++ +++ + T T A SQ + IRR M +++ A + L++ + + I IYPL Sbjct: 15 WYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPL 177
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11 Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +W+ + AP F + +G T E + RV E +L DL + + K+ + DV+G+N T F G +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IRR +++I+ +A + V + + I EI K IYP+ Sbjct: 21 EWFVVYAPDFFGSKEIGLTPADEP-------EKVIGRVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPI 184
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11 Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2 Query: 155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 +WY + AP F + +G T E + RV E +L DL + + K+ + DV+G+N T F G +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IR+ +++I+ +A + V + + I EI K IYP+ Sbjct: 21 EWYIVYAPDFFGSKEIGLTPADDP-------EKVIGRVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPI 184
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 50/179 (27.93%), Postives = 82/179 (45.81%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY + APS +G +A + ++ L R EVSL D+ + H K+R + V G T F G+ T D +RSLVRK + + A VDVKT D + +R+ + T T+Q IR+++ E + +A+ D+ +++ + + E+ I PL Sbjct: 27 WYTVYAPSY-----LGGVALAEVPAAE--AQKLLLRTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAH---------RIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPL 189 The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 186
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bpback to top |