FC930930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 46/179 (25.70%), Postives = 86/179 (48.04%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 W+ + APS +G +A ++ + L R EVSL D+ + H K+R + V G +T F G+ T D +RSLVRK + + A V+VKT D + +R+ + T T ++Q +R++M +++ +A+ D+ +++ + ++ ++ I PL Sbjct: 27 WFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPL 189
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY IK P F + +G+T AR I R EV++ +L + Y K+R ++V G T F G TTD +RS++R+ + I+A VKT D+ ++L + T R A++SQ + +R+ + +++ AA L++ + + E+ IYPL Sbjct: 19 WYTIKTPVNFEDKEIGET-PARDPDYLIG------RGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPL 181
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 52/179 (29.05%), Postives = 78/179 (43.58%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WYDI P F +G+T A T I R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL Sbjct: 24 WYDIYTPQSFGGDVIGQT-PANDPATLIG------RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL 186
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11 Identity = 52/179 (29.05%), Postives = 78/179 (43.58%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WYDI P F +G+T A T I R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL Sbjct: 24 WYDIYTPQSFGGDVIGQT-PANDPATLIG------RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL 186
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11 Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY+I P F G ++ +T ++ L R+ E+SL DL NE ++ + + V G N +T F G + T + L+S +R+ + I +DV+T D F +R+ + T V+ Y +T +IR KM +I+ A V + +G +I ++PL Sbjct: 24 WYNIYTPQSF-----GGDVIGQTPANDPSA--LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPL 186
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11 Identity = 51/179 (28.49%), Postives = 78/179 (43.58%), Query Frame = 2 Query: 158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694 WY I AP F +G T E + R EV+LGD+ ++ K+ + DV T F D LRSL+R+ + I+A + V+TTD++ ++L + FT T A SQ + IRR M +++ A L++ I + I +IYPL Sbjct: 15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPL 177 The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 186
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bpback to top |