FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 46/179 (25.70%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            W+ + APS      +G   +A    ++   + L  R  EVSL D+  +  H   K+R +   V G   +T F G+  T D +RSLVRK  + + A V+VKT D + +R+  +  T         T    ++Q   +R++M +++  +A+  D+   +++ +  ++  ++      I PL
Sbjct:   27 WFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPL 189          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY IK P  F  + +G+T  AR     I       R  EV++ +L  +    Y K+R   ++V G    T F G   TTD +RS++R+  + I+A   VKT D+  ++L  +  T R          A++SQ + +R+ + +++   AA      L++  +   +  E+      IYPL
Sbjct:   19 WYTIKTPVNFEDKEIGET-PARDPDYLIG------RGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPL 181          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 52/179 (29.05%), Postives = 78/179 (43.58%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WYDI  P  F    +G+T  A    T I       R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL
Sbjct:   24 WYDIYTPQSFGGDVIGQT-PANDPATLIG------RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL 186          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 52/179 (29.05%), Postives = 78/179 (43.58%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WYDI  P  F    +G+T  A    T I       R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL
Sbjct:   24 WYDIYTPQSFGGDVIGQT-PANDPATLIG------RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL 186          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY+I  P  F     G  ++ +T     ++  L  R+ E+SL DL NE      ++  + + V G N +T F G + T + L+S +R+  + I   +DV+T D F +R+  +  T      V+   Y +T    +IR KM +I+   A        V   +   +G +I      ++PL
Sbjct:   24 WYNIYTPQSF-----GGDVIGQTPANDPSA--LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPL 186          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 51/179 (28.49%), Postives = 78/179 (43.58%), Query Frame = 2
Query:  158 WYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            WY I AP  F    +G T            E +  R  EV+LGD+  ++     K+  +  DV      T F       D LRSL+R+  + I+A + V+TTD++ ++L  + FT         T  A  SQ + IRR M +++   A       L++  I   +   I     +IYPL
Sbjct:   15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPL 177          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_PYRIL2.855e-1125.7030S ribosomal protein S3Ae OS=Pyrobaculum islandic... [more]
RS3A_METS33.728e-1127.9330S ribosomal protein S3Ae OS=Methanobrevibacter s... [more]
RS3A_METM73.728e-1129.0530S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METM63.728e-1129.0530S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METVS4.869e-1126.8230S ribosomal protein S3Ae OS=Methanococcus vannie... [more]
RS3A_HALWD6.359e-1128.4930S ribosomal protein S3Ae OS=Haloquadratum walsby... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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