FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAPS F +R +GKT+V RT GTKIAS+GLK RVFEVSL DL N+E  A+RK +L  E+VQG+N LTNF GMN TTDKLRSLV+KW TLIEA VDVKTTD + LR+FCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + IG++IEK   SIYPL
Sbjct:   28 DWYDVKAPSMFNIRQIGKTVVTRTAGTKIASDGLKGRVFEVSLADLQNDEI-AFRKFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPL 206          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 110/180 (61.11%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I+PL
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 110/180 (61.11%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I+PL
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 110/180 (61.11%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I+PL
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.408e-60
Identity = 112/180 (62.22%), Postives = 140/180 (77.78%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAP+ F +RN+GKTLV RTQGTKIAS+GLK RVFEVSL D  N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + IG++IEK   SIYPL
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADFQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.676e-60
Identity = 114/180 (63.33%), Postives = 142/180 (78.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAPS F VRN+GKTLV RT GTKIAS+GLK RVFEVSL DL N E  A+RK RL AE+V GK+VLTNF GM+ T+DKL+SLV+KW TLIEA++D KTTD + LR F IGFTK+ PNQ+K+T YA+TSQ R IR+KM +I+  + ++ DLK +V + I + IG++IEK   SIYPL
Sbjct:   28 DWYDVKAPSQFAVRNIGKTLVNRTSGTKIASDGLKGRVFEVSLADLQNGEI-AFRKFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPL 206          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.264e-59
Identity = 114/180 (63.33%), Postives = 144/180 (80.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWY+IKAPS F  R+VGKTLV R+ G ++A++ LK RV EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G +FT+DKLRSLVRKW TLIEA V VKT+D++ LRLF IGFTKR  NQVK+T YAQTSQI QIR+KM +I+V +A++  L  L  K I EVIGREIEK T +IYPL
Sbjct:   28 DWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 114/182 (62.64%), Postives = 138/182 (75.82%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK+RVFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GM+ TTDKLRS+V+KW TLIEA VDVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEK    IYPL
Sbjct:   29 DWYDVKAPSMFATRQIGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPL 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.155e-59
Identity = 109/180 (60.56%), Postives = 142/180 (78.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I+PL
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.191e-59
Identity = 116/180 (64.44%), Postives = 141/180 (78.33%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  +A +  L  L  K I EVIGREIEK T  IYPL
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLT-KLIPEVIGREIEKATHGIYPL 206          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A_NEMVE1.950e-6063.3340S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_CANDC1.950e-6061.1140S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW1.950e-6061.1140S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL1.950e-6061.1140S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_CALJA7.408e-6062.2240S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_TRIAD9.676e-6063.3340S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_YARLI1.264e-5963.3340S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_PERAM1.650e-5962.6440S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_CANTT2.155e-5960.5640S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_PARBP8.191e-5964.4440S ribosomal protein S1 OS=Paracoccidioides brasi... [more]

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Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
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