FC930930

Overview
NameFC930930
Unique NameFC930930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.666e-57
Identity = 108/180 (60.00%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +KTTD +  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I EVIGR IEK T++IYPL
Sbjct:   28 DWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.308e-56
Identity = 112/180 (62.22%), Postives = 135/180 (75.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPL
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPL 205          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.708e-56
Identity = 107/180 (59.44%), Postives = 135/180 (75.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYDIKAP+ F  RNVGKT V R+QG K A + LK R+ E SL DL  ++E AYRK +L+ + +QG+  LTNF+GM+FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EK T  I+PL
Sbjct:   27 DWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPL 206          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.708e-56
Identity = 112/180 (62.22%), Postives = 136/180 (75.56%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEK  S IYPL
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPL 204          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 110/182 (60.44%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYDIKAPS F  R VGKTLV RTQGTKIASEGLK RV EVSL DL ++   E ++RK RL  EDVQ ++VL NF GM+ TTDKLRS+V+KW TLIEA+VDVKTTD + LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLK +V K + + I ++IEK    IYPL
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPL 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 112/180 (62.22%), Postives = 135/180 (75.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPL
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPL 205          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 110/182 (60.44%), Postives = 138/182 (75.82%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEE--HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            DWYD+KAPS F  R++GKTLV RT GTKIAS+ LK RVFEVSL DL  E E   ++RK RL AE+VQG+ +LTNF GM+FTTDKLRSLV+KW TLIE  VDVKTTD++ LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK   SIYP+
Sbjct:   29 DWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPI 210          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.805e-56
Identity = 105/180 (58.33%), Postives = 139/180 (77.22%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I PL
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.805e-56
Identity = 105/180 (58.33%), Postives = 139/180 (77.22%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +W+DIKAPS F  R VGKTL+ R+ G K A++GLK RV EV L DL   E+H+ RK++LR ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK T +I PL
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPL 207          
BLAST of FC930930 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.490e-56
Identity = 105/180 (58.33%), Postives = 136/180 (75.56%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVARTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKGTSSIYPL 694
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK RV EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G +FT+DK+RSLVRKW +L+EA V VKT D++ LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I EVIGREIEK    IYPL
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPL 207          
The following BLAST results are available for this feature:
BLAST of FC930930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RS3A1_SCHPO7.666e-5760.0040S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_CAEBR1.308e-5662.2240S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_USTMA1.708e-5659.4440S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_BRUMA1.708e-5662.2240S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_LYSTE2.913e-5660.4440S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_CAEEL2.913e-5662.2240S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_ARTSF2.913e-5660.4440S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A2_DEBHA3.805e-5658.3340S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA3.805e-5658.3340S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_PICPG6.490e-5658.3340S ribosomal protein S1 OS=Pichia pastoris (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110E11EF PostHarvP1 Citrus clementina cDNA clone C34110E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930930 ID=FC930930; Name=FC930930; organism=Citrus clementina; type=EST; length=696bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTGCCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCA
CCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGC
CAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGC
AGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGA
TTGGAAGAGAGATTGAGAAAGGCACGTCAAGCATATACCCCTTACA
back to top