FC930932

Overview
NameFC930932
Unique NameFC930932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:5..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1
Query:   97 GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLA 237
            GGIAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPEINLA
Sbjct:    1 GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 63/223 (28.25%), Postives = 97/223 (43.50%), Query Frame = 1
Query:   49 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS      + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYNN
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNN 235          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 63/223 (28.25%), Postives = 97/223 (43.50%), Query Frame = 1
Query:   49 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS      + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYNN
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNN 235          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 1
Query:   52 SLLVTLSLIKASQGAGGIAIYWGQN-------GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPA---AGG----CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG-STLHRDDLARFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            S  + LSL   +Q A  +  YWG N        ++  L+S C    Y  + ++ +  F     P  + +  C+ +   +G     C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G +T +     R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N+
Sbjct:   13 SARLALSLNLTNQTA--VLGYWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNS 226          
The following BLAST results are available for this feature:
BLAST of FC930932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHLY_PARTH5.495e-2093.62Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
CHI2_COCP71.224e-1928.25Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM1.224e-1928.25Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
YKT4_SCHPO6.952e-1528.24Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34110F01EF PostHarvP1 Citrus clementina cDNA clone C34110F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930932 ID=FC930932; Name=FC930932; organism=Citrus clementina; type=EST; length=680bp
GGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACATTCGT
CTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCCGGCG
GCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCACTTCA
ACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGAACAA
GTTTGGCAACGGCCAGACCCCTGAAATTAACCTTGCCGGCCACTGCAACC
CTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTGTCAG
AGCCGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTAGCTA
CTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTGTGGA
ACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGCTGTG
TTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATCGGGA
TGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAAGTTT
ACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGGTGCT
GCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACAACAA
CCACCTTGTCAGTATAGTTCAGGAAATACC
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