FC930933

Overview
NameFC930933
Unique NameFC930933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.307e-55
Identity = 110/174 (63.22%), Postives = 129/174 (74.14%), Query Frame = 1
Query:  100 TAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTK-------CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            T  ++  GKDY++PPP   FE  ELK WSFYRA IAEFIAT  FLY++VLTV+G  KS T        C++VG+ GI+WAFGGMIF+LVYCTAGISGGHINPAVT GLFLA K+SL RA+ YMV QCLGA CG G+VK F     Y R  GGAN+++ GY  G G+GAEIIGTF
Sbjct:    7 TEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGF-KSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQST-YYNRYGGGANMLSDGYNVGVGVGAEIIGTF 178          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.307e-55
Identity = 107/165 (64.85%), Postives = 121/165 (73.33%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMG------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            +DY +PPPAP F+  EL+ W  YRA IAEF+AT  FLY+S+LTV+G             C  VGI GIAWAFGGMIFVLVYCTAGISGGHINPAVT+GLFLARK+SL R + Y+V QCLGAICG G VK F  +  Y R  GGAN +A GY KG GLGAEIIGTF
Sbjct:   16 RDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQ-SSYYTRYGGGANELADGYNKGTGLGAEIIGTF 179          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.257e-54
Identity = 108/165 (65.45%), Postives = 123/165 (74.55%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            +DY +PPP P F+  EL  WS YRA IAEF+AT  FLY++VLTV+G  ++S+TK     C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ YMV QCLGAICG G VK F  +  Y    GGAN +A GY  G GL AEIIGTF
Sbjct:   14 RDYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQ-SSHYVNYGGGANFLADGYNTGTGLAAEIIGTF 177          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.144e-54
Identity = 106/167 (63.47%), Postives = 124/167 (74.25%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMG--------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            +DY++PPPAPL +  EL  WS YRA IAEF+AT  FLY++V TV+G        V  ++  C  VG+ GIAWAFGGMIF+LVYCTAG+SGGHINPAVTLGLFLARK+SL RAL YM  QCLGAICG  +VKGF  +  Y R  GGAN +A GY+ G GL AEIIGTF
Sbjct:   16 RDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQ-SSLYDRYGGGANELAAGYSTGTGLAAEIIGTF 181          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.657e-54
Identity = 112/181 (61.88%), Postives = 129/181 (71.27%), Query Frame = 1
Query:   94 IGTAAQTQDG----KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVK--------SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            I  AA  + G    KDY +PPPAPL +  EL  WS YRA IAEF+AT  FLYI+V TV+G           ++  CS VGI GIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARK+SL RA+ Y+V Q LGAICG G+VKGF  A  Y R  GGAN ++ GY+KG GL AEIIGTF
Sbjct:    5 IEAAAAAEGGEYMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSA-FYVRYGGGANELSDGYSKGTGLAAEIIGTF 184          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.389e-53
Identity = 108/167 (64.67%), Postives = 121/167 (72.46%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            +DY +PPPAPL +  EL  WS YRA IAEF+AT  FLYI+V TV+G            +  CS VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RAL YM  Q LGAICG  +VKGF  +G Y R  GGAN V+ GY+ G GL AEIIGTF
Sbjct:   18 RDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQ-SGFYARYGGGANEVSAGYSTGTGLAAEIIGTF 183          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.389e-53
Identity = 106/167 (63.47%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  121 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNT-------KCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            GKDY +PPP PLF+  EL  WSFYRA IAEFIAT  FLY++++TV+G  KS T       +C+ VG+ GIAWAFGGMIF+LVYCTAGISGGHINPAVT GL LARK++L RA+ YMV QCLGAICG  +VK F  A  + R  GGAN ++ GY+ G G+ AEIIGTF
Sbjct:   14 GKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGY-KSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSA-YFTRYGGGANGLSDGYSIGTGVAAEIIGTF 178          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 107/179 (59.78%), Postives = 127/179 (70.95%), Query Frame = 1
Query:   94 IGTAAQTQDG--KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            +G  A  + G  +DY +PPPAPL +  EL  WS YRA IAEF+AT  FLY++V TV+G            +  C  VG+ GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ Y+V QCLGA+CG  +VKGF  +  Y R  GGAN +A GY+KG GL AEIIGTF
Sbjct:    1 MGKEADVEAGGVRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVKGFQ-SSFYDRYGGGANELAAGYSKGTGLAAEIIGTF 178          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 96/160 (60.00%), Postives = 112/160 (70.00%), Query Frame = 1
Query:  130 YVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTK---CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            Y +PPPAPL +  EL  WS YRA IAEF+AT  FLY+S+ TV+G          C+ VG  G+AW+FG  IFVLVYCT G+SGGHINPAVTLGLF  RKLSL R + Y+V QCLGAI GAG+VKG M    Y  L GGAN V+ GY+    LGAEI+GTF
Sbjct:   23 YWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIM-KRPYDALGGGANTVSDGYSAAGALGAEIVGTF 181          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.758e-48
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            KDY +PPPAPL + GEL  WS YRA IAEF AT   + ISV TV+G  + + +    G+ GIAWAFGG+IFVLVYCTAGISGGH+NPAVT  + LAR++SL RA  Y + QC+GA+CGAG+ +   G GQY R  GGAN +A GY+ G G+ AE++GTF
Sbjct:   12 KDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE-GGAGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTF 169          
The following BLAST results are available for this feature:
BLAST of FC930933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PIP26_ARATH3.307e-5563.22Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH3.307e-5564.85Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH1.257e-5465.45Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_ORYSJ2.144e-5463.47Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ3.657e-5461.88Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE1.389e-5364.67Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ARATH1.389e-5363.47Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ2.370e-5359.78Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP27_ORYSJ1.346e-4860.00Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP28_ORYSJ1.758e-4858.49Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110F02EF PostHarvP1 Citrus clementina cDNA clone C34110F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930933 ID=FC930933; Name=FC930933; organism=Citrus clementina; type=EST; length=610bp
TGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCG
CCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCCTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
TGTTCTTGTC
back to top