FC930933

Overview
NameFC930933
Unique NameFC930933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14677 contig Ccv1_Contig14677:48..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 48/139 (34.53%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  184 SFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            + +R   AE I T   + I   +  GV  S        +  IA  FG +I  +V C   +SG HINPAVT GL +   +S+ +A+FY+++QC+GAI G+ ++K    A   G L      +A G T   G   E   TF
Sbjct:   24 TIWRCLAAELIGTLLLVLIGTGSCTGVQISEGDV----VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLC--MTSLAPGVTPPMGFLVEACITF 156          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  166 GELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG--ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF 600
            GE     F+R  + E + TF F++I V   M    + TK ST G    A A G  + V V  TAG  ISGGH+NPAVTL L +   ++L R+  Y+  Q L +     +++   G      LA   + +A G     G+ AE + TF
Sbjct:   10 GEASEPDFFRGVLGELVLTFLFVFIGVGAAM-TDGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGG-----LATPVHALAEGVGPLQGVVAEAVFTF 150          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGT 597
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLT 136          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGT 597
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLT 138          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 528
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA 117          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  193 RAGIAEFIATFPFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTF 600
            +AG+AEFI+TF F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y++ Q LG+I  + ++               ++V A G ++G G+G     EI+ TF
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLV----------FVTASSVPAFGLSEGVGVGPALVLEIVMTF 152          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 1
Query:  163 PGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVA 549
            PGEL      +A +AEFI+   F++    + M   K      T   G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +A+ Y V Q LG++    ++K   G    G  +  A V A
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGA 141          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  193 RAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 471
            RA I+EF+AT  F++ +  +++ + K     ST G +  ++ A    + V V     ISGGH+NPA+T G  L  +LSL RALFY + Q LGA+
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAV 120          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 43/120 (35.83%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 528
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA 117          
BLAST of FC930933 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 50/154 (32.47%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  157 FEPGELKSWSFYRAGIAEFIATFPFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTF 600
            F  G LK++      +AEFIAT  F++  V + +   K  ++      G+  +A A    +FV V   A ISGGH+NPAVTLGL +   +++    FY + Q LG+     ++K          +  G  V  HG   G     G+  EII TF
Sbjct:   13 FSVGSLKAY------VAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK---------YVTNGLAVPTHGVAAGLNGFQGVVMEIIITF 151          
The following BLAST results are available for this feature:
BLAST of FC930933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
AQP_CICVR7.713e-1234.53Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
TIP43_MAIZE1.316e-1134.69Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
MIP_RAT1.316e-1133.57Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.718e-1133.57Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_HUMAN1.718e-1135.83Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP1_MEDTR3.828e-1131.69Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP12_ORYSJ3.828e-1134.35Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP31_ORYSJ5.000e-1140.43Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
MIP_CAVPO5.000e-1135.83Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP2_TOBAC6.530e-1132.47Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionC34110F02EF PostHarvP1 Citrus clementina cDNA clone C34110F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930933 ID=FC930933; Name=FC930933; organism=Citrus clementina; type=EST; length=610bp
TGACTGTTTTGTGTTTTTGAGGGACTAGCAGAAATGGAAGGTAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCG
CCGCTCTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCCTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
TGTTCTTGTC
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