FC930939

Overview
NameFC930939
Unique NameFC930939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13013 contig Ccv1_Contig13013:195..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A1_RABIT (Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 68/223 (30.49%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   50 FVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFAN--TVLVYIQD------NVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            F+VV E  ER +YYG+ + L+LY  N +      S      +V   ++TPI+GA +ADA LG++ T    S +Y +G  V +LS            D N      +  + + +    L  +A+GTGG KP +S  G DQF+E + K++     FF+ +  +I  G+L +   T +V +Q          + L +G+P + +A+S+ +F  G+  Y+  KP G+
Sbjct:   18 FIVVNEFCERFSYYGMRALLILYFRNFIGWDDNLSTVIYHTFVALCYLTPILGALIADAWLGKFKTIVWLSIVYTIGQAVTSLS------SVNELTDNNHDGTPDSLPVHVAVCMIGLLLIALGTGGIKPCVSAFGGDQFEEGQEKQRNR---FFSIFYLAINAGSLLSTIITPMVRVQQCGIHVKQACYPLAFGIPAILMAVSLIVFIIGSGMYKKFKPQGN 231          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PEPT1_DROME (Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 71/227 (31.28%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   38 RACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTL-SVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVG-------WTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            ++ +F++  E  ER  YYG+ + LVLYLTNKL      +      +   +++ P++GA +AD  LG+Y T    S +Y +G +V++  +V L G+  PT          KA T+        L  +A+GTGG KP +S  G DQF    P +      FF+ + F+I  G+L + T    ++ +V        ++L +G+P + +  S+ IF AG   YR + P G+
Sbjct:   34 KSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSLVYSLGAMVVSFGAVPLSGM--PT----------KAVTV------VGLLLIAIGTGGIKPCVSAFGGDQFS--LPAQSFQLAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAFGVPAILMIFSVIIFMAGKRLYRCQPPAGN 240          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A4_RAT (Solute carrier family 15 member 4 OS=Rattus norvegicus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 70/240 (29.17%), Postives = 115/240 (47.92%), Query Frame = 2
Query:   41 ACSFVVVYEVFERMAYYGISSNLVLYLTNK-LHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVS------LPGLKPP---------------TCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            AC  V++ E+ ER A+YG+++NLVL+L     +    +++  +  ++G  ++    G ++ADA LGR     ++  +YL+GM+   L  +      L G   P                C D  ++ C  A+       FA L  + +G    K NI+  GADQ  +  P+       FFNW+ +SI  G + +   + YIQ NV +  GY +PT+ +AI+  +F  G   +  K P GS
Sbjct:   27 ACGAVLLAELLERAAFYGVTANLVLFLNGAPFNWEGAQASQALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPRSRSFLCGDPHPELVRNCSAPFPNGTAVCPDAAARRCAPAT-------FAGLVLVGLGVATVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAILSLGGIAYIQQNVSFLTGYLIPTVCVAIAFLVFLCGQSVFITKPPDGS 256          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A1_HUMAN (Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 67/223 (30.04%), Postives = 116/223 (52.02%), Query Frame = 2
Query:   50 FVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFAN--TVLVYIQD------NVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            F+VV E  ER +YYG+ + L+LY TN +      S      +V   ++TPI+GA +AD+ LG++ T    S +Y +G  V ++S S+  L      D N      +  + + +    L  +A+GTGG KP +S  G DQF+E + K++     FF+ +  +I  G+L +   T ++ +Q          + L +G+P   +A+++ +F  G+  Y+  KP G+
Sbjct:   18 FIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTSVS-SINDL-----TDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRNR---FFSIFYLAINAGSLLSTIITPMLRVQQCGIHSKQACYPLAFGVPAALMAVALIVFVLGSGMYKKFKPQGN 231          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 68/234 (29.06%), Postives = 113/234 (48.29%), Query Frame = 2
Query:   41 ACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANN-VTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDIN--------------SQDCKKASTLQLG-IFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            AC  V++ E+ ER A+YG+++NLVL+L           A+  +  ++G  ++    G ++ADA LGR     ++  +YL+G++   L ++ P  +   C D                S  C + +  +     FA L  + +G    K NI+  GADQ  +  P+       FFNW+ +SI  G + +   + YIQ NV +  GY +PT+ +AI+  +F  G   +  K P GS
Sbjct:   29 ACGAVLLAELLERAAFYGVTANLVLFLNGAPFDWEGAQASQALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGLLAFPL-LAAPRSRSFLCGDPRPELVRNCSAPFPNGSASCPENAARRCAPATFAGLVLVGLGVATVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAILSLGGIAYIQQNVSFFTGYLIPTVCVAIAFLVFLCGQSVFITKPPDGS 258          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A1_RAT (Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 64/226 (28.32%), Postives = 113/226 (50.00%), Query Frame = 2
Query:   50 FVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKAST---LQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQ--------DNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            F+VV E  ER +YYG+ + LVLY  N L      S      +V   ++TPI+GA +AD+ LG++ T    S +Y +G  V+++S         +  D+   D   +     L + +    L  +A+GTGG KP +S  G DQF+E + K++     FF+ +  +I  G+L +  +   ++            + L +G+P   +A+++ +F  G+  Y+  +P G+
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDDLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVISVS---------SINDLTDHDHDGSPNNLPLHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRNR---FFSIFYLAINAGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGN 231          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A1_MOUSE (Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 64/223 (28.70%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   50 FVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQ--------DNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            F+VV E  ER +YYG+ + LVLY  N L      S      +V   ++TPI+GA +AD+ LG++ T    S +Y +G  V+++S     +   T  D N      +  + + +    L  +A+GTGG KP +S  G DQF+E + K++     FF+ +  +I  G+L +  +   ++            + L +G+P   +A+++ +F  G+  Y+  +P G+
Sbjct:   18 FIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVISVS----SINDLTDHDHNGS--PDSLPVHVALSMVGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRNR---FFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGN 231          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A1_CANFA (Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 64/223 (28.70%), Postives = 111/223 (49.78%), Query Frame = 2
Query:   50 FVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQ--------DNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            F+VV E  ER +YYG+ + L+LY    +      S      +V   ++TPI+GA +AD+ LG++ T    S +Y +G  V  +S S+  L      D N        ++ + +    L  +A+GTGG KP +S  G DQF+E + K++     FF+ +  +I  G+L +  V   ++            + L +G+P   +A+S+ +F  G+  Y+  +P G+
Sbjct:   18 FIVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTAVS-SINDLT-----DYNKDGTPDNLSVHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRNR---FFSIFYLAINAGSLISTIVTPMLRVHECGIYSQKACYPLAFGVPAALMAVSLIVFVIGSGMYKKFQPQGN 231          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 69/236 (29.24%), Postives = 115/236 (48.73%), Query Frame = 2
Query:   35 WR--ACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTN-WVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSV------SLPGLKP-----PTCKDINSQDCKKASTLQL--GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            WR  A + V++ E+ ER A++G+++NLVLYL +     T + A      ++G  ++   VG ++AD +LGRY   A++  +YL    +L  +       S  G  P     P C    S  C ++S       + +A L  L +     + N+++ GADQ  +           FFNW+ +SI  G + +  V+ +IQ N+ + LGY +P   + ++  IF   TP +  K P GS
Sbjct:   30 WRRAAGAAVLLVEMLERAAFFGVTANLVLYLNSTNFNWTGEQATRAALVFLGASYLLAPVGGWLADVYLGRYRAVALSLLLYLAASGLLPATAFPDGRSSFCGEMPASPLGPACP---SAGCPRSSPSPYCAPVLYAGLLLLGLAASSVRSNLTSFGADQVMDLGRDATRR---FFNWFYWSINLGAVLSLLVVAFIQQNISFLLGYSIPVGCVGLAFFIFLFATPVFITKPPMGS 259          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A3_RAT (Solute carrier family 15 member 3 OS=Rattus norvegicus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/248 (27.42%), Postives = 119/248 (47.98%), Query Frame = 2
Query:    2 RNPVRRSQRGG---WR--ACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTN-WVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKP-----------PTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            R P+    R G   WR  A + V++ E+ ER A++G++SNLVLYL +       + A+  T  ++G  ++   VG ++AD +LGR+   +++  +YL    +L  +++  G +            P C   N Q    +S       +  L  LA+     + N+++ GADQ  +           FFNW+ +SI  G + +  V+ +I+ N+ +  GY +    + ++  IF   TP +  K PTGS
Sbjct:   16 RQPLVAQGRWGPRRWRRTAAAAVLLVEMLERAAFFGVTSNLVLYLNSLNFNWDGEHASRATLLFLGASYLLAPVGGWLADVYLGRFLAISLSLLLYLAATGLLLTTITDDGRRSFCGEMPELPLKPACPSANCQG-SWSSPYCATTLYLVLLLLALAASSVRSNLTSFGADQVMDLGRDATRR---FFNWFYWSINLGAILSLLVVAFIEQNISFLQGYSIIVGLVGLAFFIFLIATPVFITKPPTGS 259          
The following BLAST results are available for this feature:
BLAST of FC930939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
S15A1_RABIT1.246e-2230.49Solute carrier family 15 member 1 OS=Oryctolagus c... [more]
PEPT1_DROME1.627e-2231.28Peptide transporter family 1 OS=Drosophila melanog... [more]
S15A4_RAT1.377e-2129.17Solute carrier family 15 member 4 OS=Rattus norveg... [more]
S15A1_HUMAN2.350e-2130.04Solute carrier family 15 member 1 OS=Homo sapiens ... [more]
S15A4_MOUSE8.928e-2129.06Solute carrier family 15 member 4 OS=Mus musculus ... [more]
S15A1_RAT8.928e-2128.32Solute carrier family 15 member 1 OS=Rattus norveg... [more]
S15A1_MOUSE1.166e-2028.70Solute carrier family 15 member 1 OS=Mus musculus ... [more]
S15A1_CANFA2.598e-2028.70Solute carrier family 15 member 1 OS=Canis familia... [more]
S15A3_HUMAN3.393e-2029.24Solute carrier family 15 member 3 OS=Homo sapiens ... [more]
S15A3_RAT9.871e-2027.42Solute carrier family 15 member 3 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC34110F08EF PostHarvP1 Citrus clementina cDNA clone C34110F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930939 ID=FC930939; Name=FC930939; organism=Citrus clementina; type=EST; length=698bp
AAGGAACCCTGTTCGCAGATCCCAGCGTGGTGGATGGAGAGCCTGCTCCT
TTGTTGTTGTATATGAGGTGTTTGAACGTATGGCCTATTATGGGATATCG
TCAAATTTGGTGCTGTATTTGACAAACAAGCTGCATCAGGGCACTGTGAA
GTCGGCTAACAACGTCACCAACTGGGTTGGCACCATTTGGGTCACTCCCA
TTGTGGGCGCTTATGTTGCCGATGCCCATCTCGGCCGCTACTGGACCTTC
GCCATCGCTTCTTGTATTTACCTCATGGGGATGATTGTACTAACGCTATC
AGTGTCATTACCTGGGTTGAAACCTCCTACGTGCAAAGATATTAACAGTC
AAGACTGTAAGAAGGCTTCAACATTACAATTAGGGATCTTCTTTGCTGCA
CTCTACACACTGGCTGTGGGAACTGGAGGAACCAAGCCCAACATCTCGAC
GATAGGAGCGGACCAATTTGATGAATTTGAGCCCAAGGAGAAGGCCCATA
AGCTCTCCTTCTTCAACTGGTGGATGTTTAGCATCTTCTTTGGGACACTC
TTTGCCAATACAGTGCTTGTCTACATACAAGACAATGTGGGCTGGACCTT
GGGTTATGGGCTTCCGACACTCGGTCTTGCGATATCCATTGCGATTTTCT
TTGCTGGCACACCCTTCTACAGGCACAAGAAGCCCACAGGAAGCCCAT
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