FC930940

Overview
NameFC930940
Unique NameFC930940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 2.246e-55
Identity = 91/99 (91.92%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            TDKIIAEYIWIGGSGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR A AK F
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIF 114          

HSP 2 Score: 44.2838 bits (103), Expect = 2.246e-55
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS+ +V  E  WYGIEQEYTLL  D  W
Sbjct:  112 KIFSNPEVEKEVTWYGIEQEYTLLQKDTNW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.976e-55
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+K+IAEYIWIGGSGMD+RSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSE I Y    F+DPFRRGNNILV+CDAYTPAGEPIPTNKRHA AK F
Sbjct:   14 DTTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVF 113          

HSP 2 Score: 54.6842 bits (130), Expect = 4.976e-55
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K+FSH  VVAE PWYGIEQEYTLL  D++W
Sbjct:  111 KVFSHPDVVAEVPWYGIEQEYTLLQKDIQW 140          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.102e-54
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++TDK+IAEYIWIGGSG D+RSKARTL GPV+ PSKLPKWNYDGSSTGQAPGEDSEVI   +  FKDPFRRGNNILV+CD YTPAGEPIPTNKRH  AK F
Sbjct:   14 DATDKVIAEYIWIGGSGTDLRSKARTLTGPVNHPSKLPKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIF 114          

HSP 2 Score: 57.7658 bits (138), Expect = 1.102e-54
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH +VVAE PWYGIEQEYTLL  DVKW
Sbjct:  112 KIFSHPEVVAEVPWYGIEQEYTLLQKDVKW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.102e-54
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 2
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH   K F
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIF 114          

HSP 2 Score: 53.9138 bits (128), Expect = 1.102e-54
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIF H  V AEEPW+GIEQEYTLL  DVKW
Sbjct:  112 KIFDHPNVKAEEPWFGIEQEYTLLKKDVKW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.873e-54
Identity = 81/101 (80.20%), Postives = 94/101 (93.07%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            + TD+IIAEYIWIGG+G+D+RSKART+ GP++DP +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++ AK F
Sbjct:   14 DCTDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVF 114          

HSP 2 Score: 53.1434 bits (126), Expect = 1.873e-54
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K+FSH  V AE PWYGIEQEYTLL  DV W
Sbjct:  112 KVFSHPDVAAEVPWYGIEQEYTLLQKDVSW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 4.150e-54
Identity = 82/101 (81.19%), Postives = 93/101 (92.08%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            + TDKIIAEYIW+GGSG+D+RSKART+ GP++DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+  A  F
Sbjct:   14 DCTDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVF 114          

HSP 2 Score: 50.447 bits (119), Expect = 4.150e-54
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 3
Query:  411 KDMRLPKIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K  +   +FSH  V AE PWYGIEQEYTLL  D+ W
Sbjct:  106 KRYKAATVFSHPDVAAEVPWYGIEQEYTLLQKDLSW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.665e-53
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 2
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            T KIIAEYIW+GGSGMD+RSKARTL GPV DPSKLPKWN+DGSSTGQAPG+DSEVIL P+AIF+DPFR+G NILVMCD Y P GEPIP+NKRH  AK F
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIF 114          

HSP 2 Score: 54.299 bits (129), Expect = 7.665e-53
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  V AEEPW+GIEQEYTLL  D KW
Sbjct:  112 KIFSHPDVKAEEPWFGIEQEYTLLQKDTKW 141          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.902e-52
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ESTDK+IAEYIW+GG+GMD+RSKARTL GPV DPSKLPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR+G NILVMCD Y P GEPIPTN R+  A+ F
Sbjct:   16 ESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIF 116          

HSP 2 Score: 51.2174 bits (121), Expect = 4.902e-52
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            +IFSH  V AEEPWYGIEQEYTLL   + W
Sbjct:  114 RIFSHPDVKAEEPWYGIEQEYTLLQKHINW 143          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.532e-51
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 2
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNFQPFSSCG*RTMVWY 478
            +STD+IIAEYIWIGGSG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA AK F+  S     T  WY
Sbjct:   14 DSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEET--WY 126          
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.842e-51
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 2
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            TDKIIAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH  A+ F
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIF 176          

HSP 2 Score: 44.2838 bits (103), Expect = 1.842e-51
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            +IFS  +V ++ PW+GIEQEYTL+  DV W
Sbjct:  174 QIFSDPKVTSQVPWFGIEQEYTLMQRDVNW 203          
The following BLAST results are available for this feature:
BLAST of FC930940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_LACSA2.246e-5591.92Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA1_SOYBN4.976e-5584.16Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA1_ALNGL1.102e-5481.19Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLN15_ARATH1.102e-5484.85Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA1_MAIZE1.873e-5480.20Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA5_MAIZE4.150e-5481.19Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA2_MAIZE7.665e-5380.81Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN13_ORYSJ4.902e-5278.22Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLN14_ARATH1.532e-5183.48Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA2_HORVU1.842e-5182.83Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC34110F09EF PostHarvP1 Citrus clementina cDNA clone C34110F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930940 ID=FC930940; Name=FC930940; organism=Citrus clementina; type=EST; length=518bp
GAAGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATT
ACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCT
CTGCTCTCAGATCTCCTTAACTTTAACCTCTCAGAATCCACTGACAAGAT
CATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCA
AAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAG
TGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGA
AGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCA
ACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATT
CCAACAAACAAAAGACATGCGCCTGCCAAAAATTTTCAGCCATTCTCAAG
TTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTG
CACAANGATGTTAAATGG
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