FC930952

Overview
NameFC930952
Unique NameFC930952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: MKNK2_HUMAN (MAP kinase-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=MKNK2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 51/138 (36.96%), Postives = 67/138 (48.55%), Query Frame = 1
Query:    1 LYILPSGVPPF---------WAE------TQQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSL-DPAVLSR------LKQFSAMNKLKKMALRVIAESLSEEEIAG 348
            LYIL SG PPF         W         Q  +F+++ +G  +F    W  IS +AKDLI K+L     +RL+A +VL HPW+   G AP+ +L  P VL R      L  F+A        L    E L+EEE AG
Sbjct:  285 LYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWV--QGCAPENTLPTPMVLQRNSCAKDLTSFAAEAIAMNRQLAQHDEDLAEEEAAG 420          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: DCLK1_HUMAN (Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 YILPSGVPPFWA--ETQQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQ 270
            YIL  G PPF    + Q+ +FD +L G +DF S  W  +SDSAK+LI  ML     +R +A +VL HPW+ ++G+ P+     +V  ++K+
Sbjct:  578 YILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELITMMLLVDVDQRFSAVQVLEHPWVNDDGL-PENEHQLSVAGKIKK 667          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: DCLK2_HUMAN (Serine/threonine-protein kinase DCLK2 OS=Homo sapiens GN=DCLK2 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 YILPSGVPPFWAET--QQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQ 270
            YIL  G PPF +E   Q+ +FD +L G ++F +  W  I+DSAK+LI +ML      R TA ++L HPW+ ++  + + ++   V  +LKQ
Sbjct:  582 YILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQMLQVNVEARCTAGQILSHPWVSDD-ASQENNMQAEVTGKLKQ 671          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: CML5_ORYSJ (Calmodulin-like protein 5 OS=Oryza sativa subsp. japonica GN=CML5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 45/146 (30.82%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  331 EEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMDAADVDNSGTIDYGEFIAATVHLNKLER---------------EEHLVAAFQYFDKDGSGYITVDELQQACAE--HNMTDVLL*DIIREVLIRYDGRID 717
            +E++A  +E F   D D  G IT +EL   +R  G T    E+ +++   DVD +GTI++ EF+A  +   K  R               +E L  AF+ FDKD  G I+  EL+         +TD  +  +IRE  +  DG+++
Sbjct:   10 QEQVAEFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLA--LMARKASRGGENGGGGDDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVN 153          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: CATR_GIALA (Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  325 LSEEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMDAADVDNSGTIDYGEFIAATVH-LNKLEREEHLVAAFQYFDKDGSGYITVDELQQACAE--HNMTDVLL*DIIREVLIRYDGRID 717
            +SEE    ++E F   D D SG I F ELK  +R  G  +K  EI+ +M+  D D  G I + +F    +  ++  +  E ++ AF+ FD D +G I++  L++   E   N++D  L  +I+E     DG ID
Sbjct:   28 VSEEMKHEIREAFDLFDADRSGRIDFHELKVAMRALGFDVKKEEIQRIMNEYDRDQLGEITFQDFEEVMIEKISNRDPTEEILKAFRLFDDDATGRISLKNLRRVAKELSENISDEELLAMIQEFDRDGDGEID 161          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: CAMKV_HUMAN (CaM kinase-like vesicle-associated protein OS=Homo sapiens GN=CAMKV PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    1 LYILPSGVPPFWAETQQ--------GIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIA----ESLSEEEIAGLKEMFKAMDTDNSGA 393
            +YIL SG PPF+ E ++         +F  +L G  +F+S  W  IS +AKDL+ +++  +  +R+TA E + H WI  N  A D+++   V +++++  A  K KK A+RV          E+      +   A DT   GA
Sbjct:  210 MYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWDDISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGN-AASDKNIKDGVCAQIEKNFARAKWKK-AVRVTTLMKRLRAPEQSSTAAAQSASATDTATPGA 350          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: KPSH1_DANRE (Serine/threonine-protein kinase H1 homolog OS=Danio rerio GN=pskh1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    4 YILPSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWI 207
            YIL SG  PF  + +  ++  +LKG   F  +PWP +S+ AKD I ++L   P+ERL+A + L HPWI
Sbjct:  286 YILLSGTMPFEDDNRMRLYRQILKGKYSFSGEPWPSVSNLAKDFIDRVLTVDPNERLSAGQALKHPWI 353          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: CATR6_PARTE (Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1f PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 35/112 (31.25%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  313 IAESLSEEEIAGLKEMFKAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMDAADVDNSGTIDYGEFI-AATVHLNKLEREEHLVAAFQYFDKDGSGYITVDELQQACAE 645
            +   L+EEE+  +KE F   DTD + +I   ELKA +   G   K+  I  ++   D D SG ID+ EF+   T  +++ + +  +   F  FD + +G+IT+ +L++   E
Sbjct:   32 VKPGLTEEEVLEIKEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGFITLKDLRKVAKE 143          
BLAST of FC930952 vs. ExPASy Swiss-Prot
Match: CAMKV_RAT (CaM kinase-like vesicle-associated protein OS=Rattus norvegicus GN=Camkv PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 LYILPSGVPPFWAETQQ--------GIFDAVLKGHIDFESDPWPLISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRV 312
            +YIL SG PPF+ E ++         +F  +L G  +F+S  W  IS +AKDL+ +++  +  +R+TA E + H WI  N  A D+++   V +++++  A  K KK A+RV
Sbjct:  210 MYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWDDISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGN-AASDKNIKDGVCAQIEKNFARAKWKK-AVRV 319          
The following BLAST results are available for this feature:
BLAST of FC930952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
MKNK2_HUMAN5.136e-1136.96MAP kinase-interacting serine/threonine-protein ki... [more]
DCLK1_HUMAN5.136e-1139.56Serine/threonine-protein kinase DCLK1 OS=Homo sapi... [more]
DCLK2_HUMAN6.708e-1138.46Serine/threonine-protein kinase DCLK2 OS=Homo sapi... [more]
CML5_ORYSJ6.708e-1130.82Calmodulin-like protein 5 OS=Oryza sativa subsp. j... [more]
CATR_GIALA6.708e-1132.84Caltractin OS=Giardia lamblia GN=CAL PE=3 SV=1[more]
CAMKV_HUMAN6.708e-1131.47CaM kinase-like vesicle-associated protein OS=Homo... [more]
KPSH1_DANRE8.761e-1144.12Serine/threonine-protein kinase H1 homolog OS=Dani... [more]
CATR6_PARTE8.761e-1131.25Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1... [more]
CAMKV_RAT8.761e-1134.82CaM kinase-like vesicle-associated protein OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionC34110G09EF PostHarvP1 Citrus clementina cDNA clone C34110G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930952 ID=FC930952; Name=FC930952; organism=Citrus clementina; type=EST; length=718bp
CTGTATATATTGCCTAGTGGAGTGCCACCATTTTGGGCAGAAACACAACA
GGGAATATTTGATGCGGTGTTGAAGGGACACATTGACTTTGAGTCTGACC
CTTGGCCACTAATATCCGACAGCGCAAAAGACCTTATTCGGAAGATGTTA
TGCTCTCAACCATCAGAACGCCTGACTGCTCATGAAGTTTTATGTCATCC
CTGGATCTGTGAAAATGGAGTTGCTCCTGATAGGTCCCTTGATCCAGCTG
TACTTTCTCGTCTCAAACAATTCTCTGCAATGAATAAATTGAAAAAGATG
GCTTTACGGGTTATAGCTGAAAGCCTTTCTGAAGAGGAGATTGCTGGTTT
AAAGGAAATGTTCAAGGCCATGGATACTGACAATAGTGGTGCAATTACAT
TTGATGAACTCAAAGCTGGTTTACGAAGATATGGCTCTACCTTGAAGGAT
ACAGAGATACGTGATCTTATGGATGCGGCTGATGTGGACAATAGTGGAAC
TATTGATTATGGAGAATTTATAGCTGCAACTGTTCACCTCAATAAATTAG
AACGTGAGGAACATCTTGTTGCTGCATTCCAGTACTTCGACAAGGATGGA
AGTGGTTATATTACGGTTGATGAACTTCAGCAAGCATGTGCTGAACATAA
CATGACAGATGTTTTACTTTGAGATATAATCAGAGAAGTTTTGATCAGAT
ATGATGGAAGAATTGACT
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