FC930953

Overview
NameFC930953
Unique NameFC930953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10622 contig Ccv1_Contig10622:208..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GRHPR_MOUSE (Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 67/204 (32.84%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGA-YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKE-LLTL 693
            + G+DH+ L E ++RGI V       ++  A                     +NG W      +  G  L    VGIVGLG IG  +A+RL PFG     YT R+ +P  +  F A    ++ LAA+SD ++V C+LT +T  + +KD    +    + IN+ RG ++++++L   L  G++  AGLDV   EP  P   LLTL
Sbjct:   82 SVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTL 285          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 65/200 (32.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            +++   + GIDH+ L E ++RGI V    +  ++  A                     +NG W       L G  L    VGI+GLG IG  +A+RL PFG     YT R+ +P  +  F A   +   LAA SD ++V C+LT  T  + NKD    + +  V IN+ RG ++++ +L   L  G++  AGLDV   EP
Sbjct:   76 KVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP 275          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 68/203 (33.50%), Postives = 96/203 (47.29%), Query Frame = 1
Query:  103 AGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHG---AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELLTL 693
            AG D +D++  ++R I V N  +  S   A                       G WP+ G     P G    GK VGI+GLG IG  + +RL PFG  +  Y +R + P        Y         SD++ V   L   THH+IN + +  +    VI+N  RGA+IDE+ +   L  G++  AGLDVFE EP + KELL++
Sbjct:   91 AGYDQIDVEPFKKRHIQVANVPDLVSNATADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSM 293          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 63/208 (30.29%), Postives = 102/208 (49.04%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELLTL 693
            +++  +  G+D++D++    +GI+V NA +A S   A                     + G W D   +  G  L GK +G++GLG IG +V KR   FG +I     Y  ++    +      +++ L   +D + +   LT +T H+I ++ +  + K  +I+N  RG LIDEK L   L  G++  A LDVFE+EP     LLTL
Sbjct:   65 KVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEW-DRKRFK-GIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFEEEPPKDNPLLTL 270          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY------TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELL 687
            +IV  +  G+D++D+ E  + G++V NA N  +   A                     ++  W +  AY +GS L GK +GIVGLG IGSE+A+R   FG ++          R KK GV+   +  V      +D++ V   LT+ET  ++NK+ +    K   +IN  RG +IDE  L+  L  G + GA LDVFE EP V  +L+
Sbjct:   64 KIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREW-NRTAY-VGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEV---LESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLV 266          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRK--KKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELLTL 693
            +I+  +  G+D+VD++    RGI+V NA  + S   A                     + G W  +    +G  L GK +GI+G+G IGS+V  R   FG  I     Y S++  ++ GV+     ++  L  +SD++ +   LT ET H+I++D    +     I+N  RG +IDE  L   L  GE+ GA LDVFE+EP     LL L
Sbjct:   67 KIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRF--MGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTV---TDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEPPEGSPLLEL 271          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYP-LGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HVPKELLTL 693
            + G D+ D+     RG+L+ +     +E  A                     ++G W    +    G  +  K++GI+G+G IG  +A+R  + FG  I Y +RK        F   Y ++  L A+SD L +   LTE+THH+I ++ +  + +  ++IN GRG ++DE+ L+  L  G L  AGLDVFE EP  V  ELL L
Sbjct:   74 SVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSARRVVEMAERVKSGEWRGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSSELLAL 277          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 66/203 (32.51%), Postives = 100/203 (49.26%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            ++ V   AG ++VD+    R G+ V N  N  +E  A                     R G W  +    L     GKRVGI+G+G+IG   A++++P GC I Y +R       +K+ G S+    +   L + SDV+ + C LT  TH +I+      + K+GV IIN  RGA+I+E   +  +  G++  AGLDVF +EP
Sbjct:   85 KLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQN--LSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASF---VSFDELLSSSDVISINCPLTPATHDLISTKEFEKM-KDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEP 281          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 64/204 (31.37%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPFYA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HVPKELLTL 693
            + G D+ D+       +L+ +     +E  A                     + G W    GA   G  +  K +GI+G+G IG  +A+R    FG  + Y +R+        F A   ++  L A+SD + +   LT+ET HMI++D +  + K G++IN GRG ++DE  L+  L  G +  AGLDVFE EP  V   LLTL
Sbjct:   74 SVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKAGEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNARRTHEEAEQRFNARRCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSSPLLTL 277          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP-HVPKELLTL 693
            + G D+ D++   +RGI++ +     +E  A                     + G W    G    G  +  K++GI+G+G IG  +A+R    FG  I Y +RK        F   Y ++  L  +SD L +   LTE+THHMI ++ +  +    ++IN GRG ++DE+ L+  L    +  AGLDVFE EP  V  ELLTL
Sbjct:   73 SVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIGPDWFGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAGLDVFEQEPLPVDSELLTL 276          
The following BLAST results are available for this feature:
BLAST of FC930953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
GRHPR_MOUSE1.613e-2232.84Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GRHPR_HUMAN1.366e-2132.50Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
YN14_YEAST3.974e-2133.50Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
SERA_METJA3.974e-2130.29D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_BACSU5.190e-2133.65D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_METTH1.156e-2032.38D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GHRB_ERWT91.510e-2031.86Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
YGDH_SCHPO9.788e-2032.51Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
GHRB_SERP52.181e-1931.37Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_ENTAG2.848e-1931.86Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionC34110G10EF PostHarvP1 Citrus clementina cDNA clone C34110G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930953 ID=FC930953; Name=FC930953; organism=Citrus clementina; type=EST; length=693bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAAGACGAGCCTCATGTGCCCAAGGAGCTGCTTACATTG
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