FC930953

Overview
NameFC930953
Unique NameFC930953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10622 contig Ccv1_Contig10622:208..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: PDXB_PHOPR (Erythronate-4-phosphate dehydrogenase OS=Photobacterium profundum GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 60/213 (28.17%), Postives = 89/213 (41.78%), Query Frame = 1
Query:   82 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELG-----GAGLDVFEDEPHVPKELLTL 693
            + V  +TAG DHVD      RGI  T+A        A                                  G ++  K +GI+G G++GS +A+ L   G         K+       + ++  + A  DV+ V   +T++    THH+IN+  + AL  + ++IN  RG + D + L   L   + G      A LDVFE EPHV  ELL L
Sbjct:   61 QFVGTATAGQDHVDQALLAERGITFTSAPGCNKVGVAEYVLSALMVIGQQQ--------------------GFSIFDKTIGIIGAGNVGSYLAQCLDALGIPYLLNDPIKEQEGDTRQFHSLEAIKAQCDVITVHTPITKDGEYPTHHLINEAFIDALQPDAILINAARGPVTDNQALKKALQLSQSGLGKKLTAVLDVFEFEPHVDLELLPL 253          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: Y2355_CORGL (Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium glutamicum GN=Cgl2355 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  313 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYAN-VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            K V I+G G IG  + + L PF       +   +P  G    F  +    + A++DV ++   LT+ T+ ++N + +  +    V++NVGRG LI+  +LV  L  G + GA LDV + EP
Sbjct:  127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNSGRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVVVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEP 247          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: YPRB2_CORML (Uncharacterized protein in proB 3'region OS=Corynebacterium melassecola PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  313 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GVSYPFYAN-VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            K V I+G G IG  + + L PF       +   +P  G    F  +    + A++DV ++   LT+ T+ ++N + +  +    V++NVGRG LI+  +LV  L  G + GA LDV + EP
Sbjct:  127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNSGRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVLVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEP 247          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: PDXB_BAUCH (Erythronate-4-phosphate dehydrogenase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=pdxB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  295 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALT----EETHHMINKDVMTAL-GKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKELL 687
            G  L  K VGI+G+G+IG  + +RL  FG         +    +   +  +  L  ++DVL +   LT      T H+IN+D+++AL   + ++IN  RGA++D   L+H L +G+L    LDV+E EP++   LL
Sbjct:  111 GFHLRDKTVGIIGVGNIGRLLYQRLNAFGVPTLLCDPPQAEISTIGEWQLLEKLVTEADVLTLHTPLTYHGRHATWHLINEDLLSALPSTKRILINTCRGAVVDNVALLHALKKGKLLSVILDVWEKEPNLSLSLL 246          
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRA_SALAR (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ghrA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  319 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEPHVPKE 681
            VGI+G G +GS+VA+ L  +G  +   SR +K  PGV SY     +      + VLI     T +T  +IN++++  L     ++N+ RG  ++E +L+  L  G+L GA LDVF  EP +P+E
Sbjct:  139 VGIMGAGILGSKVAESLQAWGFPLRCWSRSRKSWPGVESYAGREELDAFLNQTRVLINLLPNTAQTVGIINRELLNKLPDSAYVLNLARGVHVNEADLLAALESGKLKGAMLDVFSQEP-LPQE 261          
The following BLAST results are available for this feature:
BLAST of FC930953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PDXB_PHOPR2.855e-1128.17Erythronate-4-phosphate dehydrogenase OS=Photobact... [more]
Y2355_CORGL4.869e-1132.23Uncharacterized protein Cgl2355/cg2587 OS=Coryneba... [more]
YPRB2_CORML6.359e-1132.23Uncharacterized protein in proB 3'region OS=Coryne... [more]
PDXB_BAUCH6.359e-1133.82Erythronate-4-phosphate dehydrogenase OS=Baumannia... [more]
GHRA_SALAR6.359e-1136.29Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC34110G10EF PostHarvP1 Citrus clementina cDNA clone C34110G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930953 ID=FC930953; Name=FC930953; organism=Citrus clementina; type=EST; length=693bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAAGACGAGCCTCATGTGCCCAAGGAGCTGCTTACATTG
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