FC930953

Overview
NameFC930953
Unique NameFC930953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECOBW (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / BW2952) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO8A (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O8 (strain IAI1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO81 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O81 (strain ED1a) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO5E (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO57 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 GN=tkrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO55 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain 55989 / EAEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
[Close]
BLAST of FC930953 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  100 TAGIDHVDLQECRRRGILVTNAGNAFSEDGAXXXXXXXXXXXXXXXXXXXXXRNGLWPDH-GAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGELGGAGLDVFEDEP 666
            + G D+ D+     R IL+ +     +E  A                     + G W    G    G+ +  K +GIVG+G IG  +A+R    F   I Y +R+        F   Y ++  L  +SD + +   LT+ETHH+   +    +    + IN GRG ++DE  L+  L +GE+  AGLDVFE EP
Sbjct:   74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEP 267
The following BLAST results are available for this feature:
BLAST of FC930953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
GHRB_ECOBW2.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO8A2.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO812.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO7I2.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO5E2.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO572.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO552.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO452.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO272.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO242.257e-1629.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC34110G10EF PostHarvP1 Citrus clementina cDNA clone C34110G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930953 ID=FC930953; Name=FC930953; organism=Citrus clementina; type=EST; length=693bp
CACGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCAC
CTCCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCA
CCGCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATT
CTTGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGT
GGTCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCAGTGATCGGT
TTGTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCA
ACGTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTC
TGAAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACAT
CAAGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCT
GGCCTTGCTGCTGATAGTGATGTCCTCATTGTGTGTTGTGCTCTGACCGA
GGAAACTCACCACATGATTAACAAGGATGTCATGACAGCACTGGGCAAGG
AAGGGGTGATAATAAATGTTGGGCGCGGTGCTCTTATTGATGAGAAGGAA
CTGGTTCACTTCTTGGTGCGGGGGGAGCTTGGTGGAGCTGGTCTTGATGT
GTTTGAAGACGAGCCTCATGTGCCCAAGGAGCTGCTTACATTG
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