FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.540e-47
Identity = 88/131 (67.18%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLEA  VGVV+FGSDR +KEG+TVKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+N K++ R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRSRVDIKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.246e-46
Identity = 88/131 (67.18%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLEA  VGVV+FGSDR +KEG+TVKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+N K++ R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRARVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.246e-46
Identity = 88/131 (67.18%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLEA  VGVV+FGSDR +KEG+TVKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+N K++ R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEADNVGVVIFGSDRDIKEGDTVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPINAKQRARVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_DROME (ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.776e-46
Identity = 88/131 (67.18%), Postives = 114/131 (87.02%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+ILE+RI GV+ +A L ETGRVLS+GDGIARV+G+ N+QA+E+VEF+SG+KGM +NLE   VGVV+FG+D+L+K+G+ VKRTG IV+VPVG ELLGRVVDALGN IDGKG +NTK++ R  +KAPGI+
Sbjct:   49 EISNILEERILGVAPKADLEETGRVLSIGDGIARVYGLNNIQADEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKQGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGAINTKDRFRVGIKAPGII 179          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BARBK (ATP synthase subunit alpha OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.184e-46
Identity = 88/133 (66.17%), Postives = 111/133 (83.46%), Query Frame = 2
Query:  209 PTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            P+E+S IL+++I+   +EA  +E G VLSVGDGIARV+G+ NVQA E+V F++GV+GM +NLE   VGVV+FGSDR ++EG+TVKR G IV+VPVGPELLGRVVDALGNPIDGKGPLN K +RR  +KAPGI+
Sbjct:    5 PSEISKILKEQIKNFDQEAEFSEIGWVLSVGDGIARVYGLDNVQAGEMVSFSNGVQGMALNLEMDNVGVVIFGSDRDIREGDTVKRLGSIVDVPVGPELLGRVVDALGNPIDGKGPLNAKNRRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSU (ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.076e-46
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+  KE+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSI (ATP synthase subunit alpha OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.076e-46
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+  KE+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRUME (ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.076e-46
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+  KE+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRUMB (ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.076e-46
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+  KE+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRUC2 (ATP synthase subunit alpha OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.076e-46
Identity = 86/131 (65.65%), Postives = 112/131 (85.50%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGPELLGRVVDALGNPIDGKGP+  KE+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDVVKRTGAIVDVPVGPELLGRVVDALGNPIDGKGPIKAKERRRVDVKAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHISN9.540e-4767.18ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_SINMW1.246e-4667.18ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHIME1.246e-4667.18ATP synthase subunit alpha OS=Rhizobium meliloti G... [more]
ATPA_DROME2.776e-4667.18ATP synthase subunit alpha, mitochondrial OS=Droso... [more]
ATPA_BARBK6.184e-4666.17ATP synthase subunit alpha OS=Bartonella bacillifo... [more]
ATPA_BRUSU8.076e-4665.65ATP synthase subunit alpha OS=Brucella suis GN=atp... [more]
ATPA_BRUSI8.076e-4665.65ATP synthase subunit alpha OS=Brucella suis (strai... [more]
ATPA_BRUME8.076e-4665.65ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUMB8.076e-4665.65ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUC28.076e-4665.65ATP synthase subunit alpha OS=Brucella canis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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