FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE RI        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  LLGRVVDALG PIDG+G L   E+RR ++K PGI+
Sbjct:    9 ELTTLLESRITNFYTNFQVDEIGRVISVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKSLLGRVVDALGVPIDGRGALGDHERRRVEVKVPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDGKG L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRMINFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICRS (ATP synthase subunit alpha OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 75/136 (55.15%), Postives = 104/136 (76.47%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V++VGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VGVV+ G D  V++G+ VKRT E++EVPVG  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVITVGDGIAQIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGVVIMGDDNQVQQGDNVKRTKEVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICRO (ATP synthase subunit alpha OS=Rickettsia rickettsii (strain Iowa) GN=atpA PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 75/136 (55.15%), Postives = 104/136 (76.47%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V++VGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VGVV+ G D  V++G+ VKRT E++EVPVG  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVITVGDGIAQIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGVVIMGDDNQVQQGDNVKRTKEVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICFE (ATP synthase subunit alpha OS=Rickettsia felis GN=atpA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 74/136 (54.41%), Postives = 103/136 (75.74%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V+SVGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VG V+ G D  V++G+ VKRT E++EVP+G  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVISVGDGIAKIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGAVIMGDDNQVQQGDNVKRTKEVLEVPIGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BDEBA (ATP synthase subunit alpha OS=Bdellovibrio bacteriovorus GN=atpA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 77/138 (55.80%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E +    E+S +L+++I   +++  ++ETG VLSVGDG+AR++G+ N  A ELVEF   V GM +NLE G VG VLFG DR +KEG+ VKRT +IV VPVG  LLGRVVDALGNPIDG+G +NT   R  + KAPGI+
Sbjct:    2 ETQIRADEISRVLKEQINQYNKKIEVSETGSVLSVGDGVARIYGLENAMAGELVEFPGEVFGMVLNLEEGYVGAVLFGEDRHIKEGDVVKRTKKIVSVPVGEALLGRVVDALGNPIDGRGAINTPHSRIVETKAPGIV 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_MARMM (ATP synthase subunit alpha OS=Maricaulis maris (strain MCS10) GN=atpA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.017e-37
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPL-NTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+    EA +++ G VLSVGDGIARV+G+  V+A ELVEF  G+KGM +NLE   VG V+FG DR +KEG+TVKR G IV+  VG  LLGRVVD LG PIDGKGPL    E+RR  +KAPGI+
Sbjct:    7 EISAILKDQIKNYGAEAKVSDVGSVLSVGDGIARVYGLDEVKAGELVEFPGGIKGMALNLERDNVGCVIFGDDRGIKEGDTVKRLGSIVDTSVGKGLLGRVVDGLGEPIDGKGPLKGVAERRRVDVKAPGII 138          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_GLUDA (ATP synthase subunit alpha OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.017e-37
Identity = 81/135 (60.00%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  209 PTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEF-ASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPL-NTKEKRRAQLKAPGIL 607
            P E+S IL+Q+I        +AETG +LSVGDGIARV+G+ NVQA E+VEF  SG +GM +NLE   VGVV+FG D  ++EG+TV RTG +VEVP G  LLGRVVD LGNPIDGKGPL      +RA +KAPGI+
Sbjct:    6 PAEISDILKQQIATFDTPVDIAETGTILSVGDGIARVYGLQNVQAGEMVEFPGSGQRGMALNLENDNVGVVIFGDDADMREGDTVSRTGAVVEVPTGKALLGRVVDGLGNPIDGKGPLVGDVVMKRADVKAPGIM 140          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICPU (ATP synthase subunit alpha OS=Rickettsia peacockii (strain Rustic) GN=atpA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 74/136 (54.41%), Postives = 103/136 (75.74%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V++VGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VG V+ G D  V++G+ VKRT E++EVPVG  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVITVGDGIAQIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGAVIMGDDNQVQQGDNVKRTKEVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICM5 (ATP synthase subunit alpha OS=Rickettsia massiliae (strain Mtu5) GN=atpA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 74/136 (54.41%), Postives = 103/136 (75.74%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V++VGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VG V+ G D  V++G+ VKRT E++EVPVG  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVITVGDGIAQIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGAVIMGDDNQVQQGDNVKRTKEVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPAM_OENBI6.198e-3858.78ATP synthase subunit alpha, mitochondrial OS=Oenot... [more]
ATPAM_MAIZE6.198e-3858.78ATP synthase subunit alpha, mitochondrial OS=Zea m... [more]
ATPA_RICRS2.355e-3755.15ATP synthase subunit alpha OS=Rickettsia rickettsi... [more]
ATPA_RICRO2.355e-3755.15ATP synthase subunit alpha OS=Rickettsia rickettsi... [more]
ATPA_RICFE3.076e-3754.41ATP synthase subunit alpha OS=Rickettsia felis GN=... [more]
ATPA_BDEBA3.076e-3755.80ATP synthase subunit alpha OS=Bdellovibrio bacteri... [more]
ATPA_MARMM4.017e-3759.09ATP synthase subunit alpha OS=Maricaulis maris (st... [more]
ATPA_GLUDA4.017e-3760.00ATP synthase subunit alpha OS=Gluconacetobacter di... [more]
ATPA_RICPU6.853e-3754.41ATP synthase subunit alpha OS=Rickettsia peacockii... [more]
ATPA_RICM56.853e-3754.41ATP synthase subunit alpha OS=Rickettsia massiliae... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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