FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_ARATH (ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ATPA PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E      E++++ E RIR       + E GRV+SVGDGIA+V+G+  +QA E+V FA+GVKGM +NLE   VG+V+FG D  +KEG+ VKRTG IV+VP G  +LGRVVDA+G PIDGKG L+  E+RR ++KAPGIL
Sbjct:    2 ELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGIL 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E      E++++ E RIR       + E GRV+SVGDGIA+V+G+  +QA E+V FA+GVKGM +NLE   VG+V+FG D  +KEG+ VKRTG IV+VP G  +LGRVVDA+G PIDG+G L+  E+RR ++KAPGIL
Sbjct:    2 ELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGRGALSDHEQRRVEVKAPGIL 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E      E++++ E RIR       + E GRV+SVGDGIA+V+G+  +QA E+V FA+GVKGM +NLE   VG+V+FG D  +KEG+ VKRTG IV+VP G  +LGRVVDA+G PIDG+G L+  E+RR ++KAPGIL
Sbjct:    2 ELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGRGALSDHEQRRVEVKAPGIL 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_BRACM (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris GN=ATPA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.527e-36
Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E      E++++ E RIR       + E GRV+SVGDGIA+V+G+  +QA E+V FA+GVKGM +NLE   VG+V+FG D  +KEG+ VKRTG IV+VP G  +LGRVVDA+G PIDG+G L+  E+RR ++KAPGIL
Sbjct:    2 ELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGRGALSDHEQRRVEVKAPGIL 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICCN (ATP synthase subunit alpha OS=Rickettsia conorii GN=atpA PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.401e-36
Identity = 73/136 (53.68%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + L E G+V++VGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   VG V+ G D  V++G+ VKRT  ++EVPVG  LLGRVVDALGNPIDGKG + +KE R  ++KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSELEEVGQVITVGDGIAQIYGLANVKSGEVVEFKSGVKGLVLNLENDSVGAVIMGDDNQVQQGDNVKRTKAVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIEMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RICAH (ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.442e-36
Identity = 73/136 (53.68%), Postives = 101/136 (74.26%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K  P EV+ IL++ I  ++  + + E G+V+SVGDGIA+++G+ NV++ E+VEF SGVKG+ +NLE   V  V+ G D  V++G+ VKRT E++EVPVG  LLGRVVDALGNPIDGKG + +KE R   +KAPGI+
Sbjct:    2 KLKPIEVAEILQKEIANINCLSEIKEVGQVISVGDGIAKIYGLANVKSGEVVEFKSGVKGLVLNLENDSVSAVIMGDDNQVQQGDNVKRTKEVLEVPVGKALLGRVVDALGNPIDGKGDIASKEYRHIAMKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_GEOUR (ATP synthase subunit alpha OS=Geobacter uraniireducens (strain Rf4) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.442e-36
Identity = 70/131 (53.44%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S I+ ++I+    E  +AETG ++S+GDGIAR+HG+    A EL+EF  G+ GM +NLE   VG  + G    +KEG+TVKRTG+IVEVPVG  L+GRVV+ALG PIDGKGP+NT +  + ++KAPGI+
Sbjct:    7 EISEIIRKQIKEYGTEVAVAETGTIISIGDGIARIHGLDKAMAGELLEFPGGISGMVLNLEEDNVGAAILGEFSEIKEGDTVKRTGKIVEVPVGEALIGRVVNALGQPIDGKGPINTDKFGKVEVKAPGIV 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_DESOH (ATP synthase subunit alpha OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.442e-36
Identity = 72/131 (54.96%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S I++++IRG  ++  L+ETG VLSVGDGIARV+G+  V   ELVEF  G+ G+ +NLE   VGV + G D  +KEG+ VKRTG I +VPVG  +LGRVVD  G PIDGKGP+N  E RR ++ APG++
Sbjct:    7 EISQIIKEQIRGFDKKVELSETGVVLSVGDGIARVYGLEKVMTMELVEFPGGILGLVLNLEEDNVGVAIMGEDTNIKEGDIVKRTGRIAQVPVGEAVLGRVVDTTGAPIDGKGPINASETRRIEVVAPGVI 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_THELT (ATP synthase subunit alpha OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.801e-36
Identity = 73/137 (53.28%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFA-SGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            + +P E++ +LE RI+   EE  L ETGRV+ +GDGIARV+G+ +V A+ELVEF  +GVKG+  NLE   VGV+L G    +KEG  VKR  +I+EVPVG ELLGRVV+ LG P+DG GP+  K  R+ ++KAPG++
Sbjct:    2 RISPGEITKVLEDRIKEFKEEIDLQETGRVVQIGDGIARVYGLNSVMADELVEFVETGVKGLAFNLEEDNVGVILLGPYSQIKEGHIVKRLKKIIEVPVGEELLGRVVNPLGEPLDGLGPVEAKHTRKIEIKAPGVI 138          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_THEYD (ATP synthase subunit alpha OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.577e-36
Identity = 69/131 (52.67%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S  L+++I    ++A ++E G V S+GDG+AR++G+ N  A E++E  +GV GM +NLE   VG +LFG DRLVKEG+ VKRTG ++E PVG EL+GRVV+A+G PIDGKGP+N K  R+  + APGI+
Sbjct:    7 EISEYLKKQIADFEKKADVSEVGIVTSIGDGVARIYGLDNCMASEMLELPNGVYGMALNLEEDNVGAILFGDDRLVKEGDLVKRTGRVMETPVGEELIGRVVNAIGIPIDGKGPINAKTSRKVDVIAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPAM_ARATH6.853e-3755.07ATP synthase subunit alpha, mitochondrial OS=Arabi... [more]
ATPAM_RAPSA1.527e-3654.35ATP synthase subunit alpha, mitochondrial OS=Rapha... [more]
ATPAM_BRANA1.527e-3654.35ATP synthase subunit alpha, mitochondrial OS=Brass... [more]
ATPAM_BRACM1.527e-3654.35ATP synthase subunit alpha, mitochondrial OS=Brass... [more]
ATPA_RICCN3.401e-3653.68ATP synthase subunit alpha OS=Rickettsia conorii G... [more]
ATPA_RICAH4.442e-3653.68ATP synthase subunit alpha OS=Rickettsia akari (st... [more]
ATPA_GEOUR4.442e-3653.44ATP synthase subunit alpha OS=Geobacter uraniiredu... [more]
ATPA_DESOH4.442e-3654.96ATP synthase subunit alpha OS=Desulfococcus oleovo... [more]
ATPA_THELT5.801e-3653.28ATP synthase subunit alpha OS=Thermotoga lettingae... [more]
ATPA_THEYD7.577e-3652.67ATP synthase subunit alpha OS=Thermodesulfovibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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