FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.559e-44
Identity = 84/131 (64.12%), Postives = 110/131 (83.97%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FG+DR +KEG+ VKRTG IV+VPVGP LLGRVVDALGNPIDGKGP+   E+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLESDNVGVVIFGADRDIKEGDIVKRTGAIVDVPVGPGLLGRVVDALGNPIDGKGPIVATERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_METS4 (ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46) GN=atpA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.872e-44
Identity = 86/131 (65.65%), Postives = 109/131 (83.21%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA + E G+VLSVGDGIARV+G+ NVQA E+VEF SGV+GM +NLE   VGVV+FG DR +KEG+TVKRTG IV+VPVG  LLGRVVDALGNPIDGKGP+ + E+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFESGVRGMALNLEQDNVGVVIFGVDRDIKEGQTVKRTGAIVDVPVGKGLLGRVVDALGNPIDGKGPIVSTERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_JANSC (ATP synthase subunit alpha OS=Jannaschia sp. (strain CCS1) GN=atpA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.872e-44
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S IL+ +I+   ++A +AE GRVLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLEA  VGVV+FGSDR +KEG+TVKRT  IV+VP G ELLGRVVD LGNP+DGKGP+N  E+R A  KAPGI+
Sbjct:    7 EISQILKDQIKSFGQDAQVAEVGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIQGMALNLEADNVGVVIFGSDRDIKEGDTVKRTNSIVDVPAGNELLGRVVDGLGNPLDGKGPINASERRVADSKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOCA (ATP synthase subunit alpha OS=Rhodobacter capsulatus GN=atpA PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.289e-43
Identity = 84/131 (64.12%), Postives = 107/131 (81.68%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   ++A +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VG+V+FGSDR +KEG+TVKRT  IV+VP G  LLGRVVD LGNPIDGKGP+  KE+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQDAQVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGIVIFGSDRDIKEGDTVKRTNAIVDVPAGEGLLGRVVDGLGNPIDGKGPIVAKERRIADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_ERYLH (ATP synthase subunit alpha OS=Erythrobacter litoralis (strain HTCC2594) GN=atpA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.289e-43
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S +++ +I     EA ++E G VLSVGDGIAR+HG+ NVQA E+VEFA+GV+GM +NLEA  VGVV+FGSD  +KEG+ VKRT  IV+VPVG  LLGRVVDALGNPIDGKGP+ T E+RR +LKAPGI+
Sbjct:    7 EISKVIKDQIANFGTEAQVSEVGSVLSVGDGIARIHGLDNVQAGEMVEFANGVQGMALNLEADNVGVVIFGSDAEIKEGDNVKRTETIVDVPVGKALLGRVVDALGNPIDGKGPIETTERRRVELKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_AZOC5 (ATP synthase subunit alpha OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.684e-43
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+    EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE   VGVV+FGSDR +KEG+TVKRTG IV+VPVG  LLGRVVDALGNPIDGKGP+   E+RR  +KAPGI+
Sbjct:    7 EISAILKEQIQNFGREAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLEIDNVGVVIFGSDRDIKEGQTVKRTGAIVDVPVGRGLLGRVVDALGNPIDGKGPIEATERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BARQU (ATP synthase subunit alpha OS=Bartonella quintana GN=atpA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.199e-43
Identity = 84/133 (63.16%), Postives = 109/133 (81.95%), Query Frame = 2
Query:  209 PTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            P+E+S IL+++IR   ++A ++E G VLSVGDGIARV+G+ N+QA E+V F++GV GM +NLE   VGVV+FGSDR ++EG++VKR G IV+VPVGP LLGRVVDALGNPIDGKGPL   E+RR  +KAPGI+
Sbjct:    5 PSEISKILKEQIRDFDQKAEVSEIGWVLSVGDGIARVYGLDNIQAGEMVSFSNGVHGMALNLEIDNVGVVIFGSDRDIREGDSVKRLGAIVDVPVGPALLGRVVDALGNPIDGKGPLKATERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BARHE (ATP synthase subunit alpha OS=Bartonella henselae GN=atpA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.872e-43
Identity = 85/133 (63.91%), Postives = 108/133 (81.20%), Query Frame = 2
Query:  209 PTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            P+E+S IL+++I+   ++A ++E G VLSVGDGIARV+G+ NVQA E+V F++GV+GM +NLE   VGVV+FGSDR ++EG+ VKR G IVEVPVGP LLGRVVDALGNPIDGKGPL   E RR  +KAPGI+
Sbjct:    5 PSEISKILKEQIKNFDQKAEVSEIGWVLSVGDGIARVYGLDNVQAGEMVSFSNGVRGMALNLEIDNVGVVIFGSDRDIREGDCVKRLGAIVEVPVGPALLGRVVDALGNPIDGKGPLKATEYRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_ZYMMO (ATP synthase subunit alpha OS=Zymomonas mobilis GN=atpA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.752e-43
Identity = 83/131 (63.36%), Postives = 109/131 (83.21%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S ++ ++I G   +A ++E GRV+SVGDGIARV+G+  V+A E+V F+SGV+GM +NLEA  VGVV+FGSD  V EG+TV+RTG+IV+VPVGPELLGRVVDALGNPIDGKGP+N K +RR++  APGI+
Sbjct:    7 EISKVIREQIEGFGADAEVSEVGRVISVGDGIARVYGLDKVEAGEMVTFSSGVQGMALNLEADNVGVVIFGSDLEVGEGDTVRRTGQIVDVPVGPELLGRVVDALGNPIDGKGPINAKLRRRSEEMAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_ROSDO (ATP synthase subunit alpha OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.900e-43
Identity = 85/131 (64.89%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA +AE GRVLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE+  VGVV+FGSDR +KEG+TVKRT  IV VP G ELLGRVVD LGNPIDGKGP+ TK    A +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVAEVGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIQGMALNLESDNVGVVIFGSDRDIKEGDTVKRTNSIVSVPTGDELLGRVVDGLGNPIDGKGPIKTKTTSVADVKAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_OCHA47.559e-4464.12ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_METS49.872e-4465.65ATP synthase subunit alpha OS=Methylobacterium sp.... [more]
ATPA_JANSC9.872e-4464.89ATP synthase subunit alpha OS=Jannaschia sp. (stra... [more]
ATPA_RHOCA1.289e-4364.12ATP synthase subunit alpha OS=Rhodobacter capsulat... [more]
ATPA_ERYLH1.289e-4364.89ATP synthase subunit alpha OS=Erythrobacter litora... [more]
ATPA_AZOC51.684e-4364.89ATP synthase subunit alpha OS=Azorhizobium caulino... [more]
ATPA_BARQU2.199e-4363.16ATP synthase subunit alpha OS=Bartonella quintana ... [more]
ATPA_BARHE2.872e-4363.91ATP synthase subunit alpha OS=Bartonella henselae ... [more]
ATPA_ZYMMO3.752e-4363.36ATP synthase subunit alpha OS=Zymomonas mobilis GN... [more]
ATPA_ROSDO4.900e-4364.89ATP synthase subunit alpha OS=Roseobacter denitrif... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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