FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_METNO (ATP synthase subunit alpha OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.900e-43
Identity = 85/131 (64.89%), Postives = 107/131 (81.68%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA + E G+VLSVGDGIARV+G+  VQA E+VEF SGV+GM +NLE   VGVV+FG DR +KEG+TVKRTG IV+VPVG  LLGRVVDALGNPIDGKGP+   E+RR  +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDKVQAGEMVEFESGVRGMALNLEQDNVGVVIFGVDRDIKEGQTVKRTGAIVDVPVGKGLLGRVVDALGNPIDGKGPIVASERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BART1 (ATP synthase subunit alpha OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.900e-43
Identity = 84/133 (63.16%), Postives = 108/133 (81.20%), Query Frame = 2
Query:  209 PTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            P+E+S IL+++I+   ++A ++E G VLSVGDGIARV+G+ NVQA E+V F +GV+GM +NLE   VGVV+FGSDR ++EG+ VKR G IV+VPVGP LLGRVVDALGNPIDGKGPL   E+RR  +KAPGI+
Sbjct:    5 PSEISKILKEQIKNFDQKAEVSEIGWVLSVGDGIARVYGLDNVQAGEMVAFPNGVRGMALNLEVDNVGVVIFGSDRDIREGDCVKRLGAIVDVPVGPALLGRVVDALGNPIDGKGPLKETERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA2_DINSH (ATP synthase subunit alpha 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.900e-43
Identity = 84/131 (64.12%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   +EA +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VGVV+FGSDR +KEG+ VKRT  IV+VPVG  LLGRVVD LGNP+DGKGP+ T E+  A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQEAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEIDNVGVVIFGSDRDIKEGDIVKRTKSIVDVPVGDALLGRVVDGLGNPLDGKGPIETTERSIADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOSK (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.399e-43
Identity = 83/131 (63.36%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   ++A +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VGVV+FG DR +KEG+TVKRT  IV+VP G  LLGRVVD LGNPIDGKGP+   E+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS4 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.399e-43
Identity = 83/131 (63.36%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   ++A +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VGVV+FG DR +KEG+TVKRT  IV+VP G  LLGRVVD LGNPIDGKGP+   E+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA1_RHOS1 (ATP synthase subunit alpha 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.399e-43
Identity = 83/131 (63.36%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   ++A +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VGVV+FG DR +KEG+TVKRT  IV+VP G  LLGRVVD LGNPIDGKGP+   E+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQQAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS5 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 83/131 (63.36%), Postives = 104/131 (79.39%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   + A +AE GRVLSVGDGIARVHG+ NVQA E+VEF  G++GM +NLE   VGVV+FG DR +KEG+TVKRT  IV+VP G  LLGRVVD LGNPIDGKGP+   E+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGQAAEVAEVGRVLSVGDGIARVHGLDNVQAGEMVEFPGGIRGMALNLEVDNVGVVIFGDDRSIKEGDTVKRTKSIVDVPAGDALLGRVVDGLGNPIDGKGPIAATERRVADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_PARL1 (ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 83/131 (63.36%), Postives = 107/131 (81.68%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+Q+I+    EA ++E G+VLSVGDGIARV+G+ NV+A E+VEF  GV+GM +NLE   VGVV+FGSDR +KEG+TVKRTG IV++PVG  LLGRVVD LGNP+DGKGP+   E+RR  +KAPGI+
Sbjct:    7 EISAILKQQIKDFGAEAQVSEIGQVLSVGDGIARVYGLDNVEAGEMVEFPGGVRGMALNLEEDNVGVVIFGSDRNIKEGDTVKRTGAIVDIPVGKGLLGRVVDPLGNPLDGKGPIEGVERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_MAGSA (ATP synthase subunit alpha OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 84/131 (64.12%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+Q+I     EA +AE G+VLSVGDGIARVHG+  VQA E+VEF  G+KGM +NLE   VGVV+FG DR +KEG+ VKRTG IV+VPVG  LLGRVVDALGNPIDGKGP+    ++R  +KAPGI+
Sbjct:    7 EISAILKQQIATFGTEAEVAEVGQVLSVGDGIARVHGLDKVQAGEMVEFPGGIKGMALNLETDNVGVVIFGDDRNIKEGDVVKRTGSIVDVPVGKGLLGRVVDALGNPIDGKGPIEAASRQRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_SILPO (ATP synthase subunit alpha OS=Silicibacter pomeroyi GN=atpA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.862e-42
Identity = 85/131 (64.89%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA +AE GRVLSVGDGIARV+G+ NVQA E+VEF  G+ GM +NLE   VGVV+FGSDR +KEG+TVKRT  IV+VP G ELLGRVVD LGNPIDGKGP+N K +  A +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVAEIGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIMGMALNLENDNVGVVIFGSDRDIKEGDTVKRTNSIVDVPQGDELLGRVVDGLGNPIDGKGPINAKLRGVADVKAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_METNO4.900e-4364.89ATP synthase subunit alpha OS=Methylobacterium nod... [more]
ATPA_BART14.900e-4363.16ATP synthase subunit alpha OS=Bartonella tribocoru... [more]
ATPA2_DINSH4.900e-4364.12ATP synthase subunit alpha 2 OS=Dinoroseobacter sh... [more]
ATPA_RHOSK6.399e-4363.36ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_RHOS46.399e-4363.36ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA1_RHOS16.399e-4363.36ATP synthase subunit alpha 1 OS=Rhodobacter sphaer... [more]
ATPA_RHOS51.426e-4263.36ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_PARL11.426e-4263.36ATP synthase subunit alpha OS=Parvibaculum lavamen... [more]
ATPA_MAGSA1.426e-4264.12ATP synthase subunit alpha OS=Magnetospirillum mag... [more]
ATPA_SILPO1.862e-4264.89ATP synthase subunit alpha OS=Silicibacter pomeroy... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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