FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOBL (ATP synthase subunit alpha OS=Rhodopseudomonas blastica GN=atpA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.417e-42
Identity = 82/131 (62.60%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+++I+   ++A +AE GRVLSVGDGIARV+G+ NVQA E+VEF  G++GM +NLE   VG+V+FG DR +KEG+TVKRT  IV+VP G  LLGRVVDALGNPIDGKGP+   E+R A +KAPGI+
Sbjct:    7 EISAILKEQIKNFGKDAEVAEVGRVLSVGDGIARVYGLDNVQAGEMVEFPGGIRGMALNLEVDNVGIVIFGDDRDIKEGDTVKRTKSIVDVPAGNGLLGRVVDALGNPIDGKGPIVASERRIADVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_SPHAL (ATP synthase subunit alpha OS=Sphingopyxis alaskensis GN=atpA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.075e-42
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S +++ +I     +A + E G VLSVGDGIARVHG+ NVQA E+VEFA+GVKGM +NLEA  VG+V+FGSD  +KEG+ VKRTG IV+VPVG  LLGRVVD LGNPIDGKGP+   ++ R ++KAPGI+
Sbjct:    7 EISKVIKDQIANFGTDATVTEIGSVLSVGDGIARVHGLDNVQAGEMVEFANGVKGMALNLEADNVGIVIFGSDAAIKEGDQVKRTGTIVDVPVGKGLLGRVVDGLGNPIDGKGPIKADKRMRVEVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOP2 (ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain HaA2) GN=atpA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.075e-42
Identity = 81/131 (61.83%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA + E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE   VGVV+FG+DR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+   E++R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRSIVDTPVGKGLLGRVVDALGNPIDGKGPIQATERKRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_SPHWW (ATP synthase subunit alpha OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.240e-42
Identity = 78/131 (59.54%), Postives = 104/131 (79.39%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S ++  +I     EA ++E G+VLSVGDGIAR+HG+ NVQA E++EF++G+KGM +NLEA  VG V+FGSD  +KEG+ VKRTG IV+VPVG  LLGRVVD LGNPIDGKGP+  +++ R ++KAPGI+
Sbjct:    7 EISKVIRDQIASFGSEAQISEVGQVLSVGDGIARIHGLDNVQAGEMIEFSNGIKGMALNLEADNVGAVIFGSDSQIKEGDVVKRTGTIVDVPVGKGLLGRVVDGLGNPIDGKGPIVAEQRSRVEVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RHOPB (ATP synthase subunit alpha OS=Rhodopseudomonas palustris (strain BisB18) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.240e-42
Identity = 80/131 (61.07%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA + E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE   VG+V+FG+DR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+ + E++R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGIVIFGADREIKEGQTVKRTRAIVDTPVGKGLLGRVVDALGNPIDGKGPIQSTERKRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_OLICO (ATP synthase subunit alpha OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.207e-41
Identity = 79/131 (60.31%), Postives = 108/131 (82.44%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   ++A ++E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE+  VG+V+FG+DR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+ + E++R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQDAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLESDNVGIVIFGADREIKEGQTVKRTRAIVDTPVGKGLLGRVVDALGNPIDGKGPIQSDERKRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_NITHX (ATP synthase subunit alpha OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.207e-41
Identity = 79/131 (60.31%), Postives = 106/131 (80.92%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA ++E G+VLSVGDGIARV+G+ N+QA E+VEF +G +GM +NLE   VG+V+FG+DR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+   E++R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNIQAGEMVEFENGTRGMALNLETDNVGIVIFGADREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIQATERKRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_XANP2 (ATP synthase subunit alpha OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.576e-41
Identity = 81/131 (61.83%), Postives = 107/131 (81.68%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+++IL+++I+   +EA ++E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE   VG+V+FGSDR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+   E+RR  +KAPGI+
Sbjct:    7 EITAILKEQIQNFGQEAEVSEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLEIDNVGIVIFGSDREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIVYTERRRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_METSB (ATP synthase subunit alpha OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.576e-41
Identity = 83/131 (63.36%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S IL+  I     EA + E G+VLSVGDGIARV+G+ NV+A E+VEF +GV+GM +NLE   VGVV+FGSDR +KEG+TVKRTG IV+VPVG  LLGRVVDALGNPIDGKGP+  + + R  +KAPGI+
Sbjct:    7 EISQILKNEIANFGNEASVTEVGQVLSVGDGIARVYGLDNVEAGEMVEFENGVRGMALNLEVDNVGVVIFGSDRDIKEGQTVKRTGAIVDVPVGRGLLGRVVDALGNPIDGKGPIPYETRSRVDVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BRASO (ATP synthase subunit alpha OS=Bradyrhizobium sp. (strain ORS278) GN=atpA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.576e-41
Identity = 81/131 (61.83%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I+   +EA + E G+VLSVGDGIARV+G+ NVQA E+VEF +G +GM +NLE   VGVV+FG+DR +KEG+TVKRT  IV+ PVG  LLGRVVDALGNPIDGKGP+   E++R  +KAPGI+
Sbjct:    7 EISAILKDQIKNFGQEAEVTEVGQVLSVGDGIARVYGLDNVQAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRAIVDAPVGKGLLGRVVDALGNPIDGKGPIQFTERKRVDVKAPGII 137          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHOBL5.417e-4262.60ATP synthase subunit alpha OS=Rhodopseudomonas bla... [more]
ATPA_SPHAL7.075e-4261.83ATP synthase subunit alpha OS=Sphingopyxis alasken... [more]
ATPA_RHOP27.075e-4261.83ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_SPHWW9.240e-4259.54ATP synthase subunit alpha OS=Sphingomonas wittich... [more]
ATPA_RHOPB9.240e-4261.07ATP synthase subunit alpha OS=Rhodopseudomonas pal... [more]
ATPA_OLICO1.207e-4160.31ATP synthase subunit alpha OS=Oligotropha carboxid... [more]
ATPA_NITHX1.207e-4160.31ATP synthase subunit alpha OS=Nitrobacter hamburge... [more]
ATPA_XANP21.576e-4161.83ATP synthase subunit alpha OS=Xanthobacter autotro... [more]
ATPA_METSB1.576e-4163.36ATP synthase subunit alpha OS=Methylocella silvest... [more]
ATPA_BRASO1.576e-4161.83ATP synthase subunit alpha OS=Bradyrhizobium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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