FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_CAUCN (ATP synthase subunit alpha OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=atpA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/132 (58.33%), Postives = 103/132 (78.03%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFA-SGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S+IL+ +I    EEA +++ G+VLSVGDGIAR++G+ NVQA E++EF  +GVKGM +NLE   VG V+FG D+ +KEG+ V+R GEIV+VPVG  LLGRVV+ LG PIDGKGP+   E+RR  +KAPGI+
Sbjct:    7 EISAILKSQIANFGEEAAVSDVGQVLSVGDGIARIYGLDNVQAGEMLEFPKAGVKGMALNLERDNVGAVIFGQDQEIKEGDEVRRLGEIVDVPVGRGLLGRVVNPLGEPIDGKGPIQYTERRRVDVKAPGII 138          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_WHEAT (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDGKG L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDGKG L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDGKG L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDGKG L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E      E++S+LE RI        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVD LG PIDG+G L+  E+RR ++KAPGI+
Sbjct:    2 ELSPRAAELTSLLESRISNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDGLGVPIDGRGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE RI        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDG+G L+  E+RR ++KAPGI+
Sbjct:    9 ELTTLLESRISNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E++++LE RI        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDG+G L+  E+RR ++KAPGI+
Sbjct:    9 ELTNLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGII 139          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_MAGSM (ATP synthase subunit alpha OS=Magnetococcus sp. (strain MC-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 2
Query:  215 EVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E+S IL+++I    +EA ++E G V++VGDGIAR +G+ NV A E+VEF  G +GM +NLE   VG+V+FG    +KEG TVKRTG IV+VPVG  LLGRV D LGNPID KGPL T E+R A++KAPGI+
Sbjct:    7 EISGILKKQIAEYGKEAEVSEVGEVIAVGDGIARAYGLDNVMAGEMVEFEDGTQGMALNLEEDNVGIVIFGEGLAIKEGTTVKRTGRIVDVPVGKGLLGRVTDGLGNPIDDKGPLETTERRLAEVKAPGII 137          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 77/138 (55.80%), Postives = 103/138 (74.64%), Query Frame = 2
Query:  194 EAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            E  +   E++++LE R+        + E GRV+SVGDGIARV+G+  +QA E+VEFASGVKG+ +NLE   VG+V+FGSD  +KEG+ VKRTG IV+VP G  +LGRVVDALG PIDG+G L+  E+RR ++KAPGI+
Sbjct:    2 EFSSRAAELTTLLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGII 139          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CAUCN4.746e-3858.33ATP synthase subunit alpha OS=Caulobacter crescent... [more]
ATPAM_WHEAT4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Triti... [more]
ATPAM_ORYSJ4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSI4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSA4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_NICPL4.746e-3856.52ATP synthase subunit alpha, mitochondrial OS=Nicot... [more]
ATPAM_HELAN4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Helia... [more]
ATPAM_BETVU4.746e-3858.78ATP synthase subunit alpha, mitochondrial OS=Beta ... [more]
ATPA_MAGSM6.198e-3858.02ATP synthase subunit alpha OS=Magnetococcus sp. (s... [more]
ATPAM_PHAVU6.198e-3855.80ATP synthase subunit alpha, mitochondrial OS=Phase... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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