FC930959

Overview
NameFC930959
Unique NameFC930959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL-KDK 423
            ++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+ +VD         +   Y + D  V+S++  SL KDK
Sbjct:   83 LIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224          
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 48/142 (33.80%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 IVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 411
            ++ + +  +WS   +S  I   PP I ++ I E       S  RF   +IN     L +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +   + K+  ++KK    F++KV++KIP++
Sbjct:   73 LLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207          
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 429
            ++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN   ++  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D +D   EK  +  K     F   +  K P  +  +KK
Sbjct:   64 LLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID---EKVNSTSK-----FVRNISRKFPLPINKEKK 198          
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 IVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 417
            ++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++ +DSF  K   E      VF  +V+SKIPR+ K
Sbjct:   55 LLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189          
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 35/108 (32.41%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 324
            ++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL +   +++ TVP  YE+YED +
Sbjct:   66 LLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
The following BLAST results are available for this feature:
BLAST of FC930959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLP_ARATH5.636e-1729.58Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH9.614e-1733.80Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH1.388e-1533.57Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.005e-1433.57Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH9.949e-1432.41Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34110H04EF PostHarvP1 Citrus clementina cDNA clone C34110H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930959 ID=FC930959; Name=FC930959; organism=Citrus clementina; type=EST; length=675bp
ATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCAT
TAACAAGTCTCCACCACGCATTCCGGAAGTATATATCCCTGAGGAACCAG
TTTTACAGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCACT
CTTCTGAGGGAAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGGT
GATTGCTGGCTTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTCT
TGACCTTGTTCTACATAGTTTTTGTACTGCTTCACACTGTGCCTGTGATA
TATGAGAAGTATGAGGATCGGGTGGATTCATTTTCTGAGAAGGCATGGGC
TGAGATCAAGAAGCAGTATGCAGTCTTTGATGCCAAGGTCTTAAGTAAGA
TACCGAGGTCATTGAAGGACAAGAAGAAGGCTTAGAATGGTGGTATAAAT
TTGTGGTCTTTGCTAGGTTCTGACACACATTTGGTAGAAAGTATTTTATC
TAGGTGTTATGAAACTGTTATCCAGTGTTGGCTTGAACCCTGTTTTATTC
CTTTGTTGTTCTAGAGGTGGTTGGGTTCACAATATGGATATTTTGTACTT
GTTTATGCTACATATGTCGTAGCTATTTGCATGGATATGTGTGAGTATTA
TGCTGATGTNGTATTATGTTTTTTA
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