FC930959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17 Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1 Query: 1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL-KDK 423 ++ + + F+ + S F N+ +PE+ + EE V A++ R ++N + ++ G D + F V+ LW++S +GS+ + TL YI +L T+P +Y KY+ +VD + Y + D V+S++ SL KDK Sbjct: 83 LIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17 Identity = 48/142 (33.80%), Postives = 84/142 (59.15%), Query Frame = 1 Query: 1 IVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 411 ++ + + +WS +S I PP I ++ I E S RF +IN L +I+SG+D + + LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ + + K+ ++KK F++KV++KIP++ Sbjct: 73 LLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 1 Query: 1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 429 ++ +A+ FLW+ ++T +N+ P +P + IPEE + A LR IN ++ +I R+ + L V LW +S VG+ N LTL YI +L + P++YEKY+D +D EK + K F + K P + +KK Sbjct: 64 LLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID---EKVNSTSK-----FVRNISRKFPLPINKEKK 198
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 1 IVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLK 417 ++ + +LFLW+ F + PP E+ P+ P+ L S + + +L EIA G+D K FL I + ++ +GS+ + LT+ YI V T+PV+Y ++++ +DSF K E VF +V+SKIPR+ K Sbjct: 55 LLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSFMGKVSEEKNNLLEVF-KQVVSKIPRAPK 189
BLAST of FC930959 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14 Identity = 35/108 (32.41%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 1 IVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 324 ++ L++LFLWS +++ +N+ P +PE I E + + LR +N+ + +IA RD + + V L+++S++GS +F TL + +++ TVP YE+YED + Sbjct: 66 LLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173 The following BLAST results are available for this feature:
BLAST of FC930959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930959 ID=FC930959; Name=FC930959; organism=Citrus clementina; type=EST; length=675bpback to top |