FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +   GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.508e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTDTTYP GFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++  +G   IP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 5.888e-60
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +KVDGKVRTD TYPAGFMDVIS+EKTGE+FRL+YD KGRFTVHRI  EEA+YKLCKVK++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.922e-59
Identity = 103/144 (71.53%), Postives = 125/144 (86.81%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI +EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.984e-59
Identity = 106/144 (73.61%), Postives = 122/144 (84.72%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP  W+L K+ G +AP+ S GPHKLR+ LPL++F+RNRLKYALNG EV  I+MQRLVKVDGKVRTD TYPAG+MDVI+LEKTGE FRLVYD KGRF +HRI AEEA+YKLCKVK+ QLG  G+PFLVTHD RT
Sbjct:    3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 4.984e-59
Identity = 103/144 (71.53%), Postives = 124/144 (86.11%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4Y1_PANTR3.452e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA3.452e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_MONDO3.452e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4Y1_HUMAN3.452e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO3.452e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4X_MONDO4.508e-6073.6140S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_ICTPU5.888e-6073.6140S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_CRIGR2.922e-5971.5340S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_DROME4.984e-5973.6140S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_BOVIN4.984e-5971.5340S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
back to top