FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHD 457
            HQKRLS P  W + + + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHD 138          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHD 457
            HQKRLS P  W + + + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHD 138          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 2
Query:   56 KRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            K + AP    + + S  +A  + PG HK    +PL++ +R+ LK     RE+  I+   LV VDGKV  +     GFMD +++  +G  + + YD KG+  +     E    KL +VK     KGG   +  HD  T
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGST 140          
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_HALSA1.018e-1133.0930S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS31.018e-1133.0930S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_PICTO1.737e-1132.1230S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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