FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.198e-58
Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP  W+LGK+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL   EV  I MQRL+KVDGKVRTD+ YP GFMDV+++EKTGE FRL+YD KGRF++HRI  EEA+YKLCKV+RVQ G  G+PFLVTHD RT
Sbjct:    3 RGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.198e-58
Identity = 108/144 (75.00%), Postives = 122/144 (84.72%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+APSHW+L K+SGTYAP+ S GPH LR+ LPL VF+RNRL YAL GREVKAIMMQ+ V+V GKVRTDTTYPAGFMDVI+LE T EHFRL YD KG+F VHRI AEEA YKL KVK+VQLGK G+P++VTHD RT
Sbjct:    3 RGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.603e-57
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP  W+L K+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV  I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFTVHRI  EEA+YKLCKVKRV  G   +PFLVTHD RT
Sbjct:    3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 102/144 (70.83%), Postives = 121/144 (84.03%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP  W+L K+ G +AP+ S GPHKLR+ LPLI+ +RNRLKYAL G EVK I+ QRL+KVDGKVRTDT YPAGFMDV+++EKTGE FRL+YD KGRFT+HRI  EEA+YKLC+VKRVQ+G  G+PFL THDART
Sbjct:    3 RGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 102/144 (70.83%), Postives = 121/144 (84.03%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQ  +K+DGKVR D TYPAGF+DVIS+EKTGEHFRLVY+TKG F VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDART 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.093e-57
Identity = 101/144 (70.14%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP  W+L K+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV  I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFT+HRI  EEA+YKLCKVKRV  G   +P+LVTHD RT
Sbjct:    3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 94/144 (65.28%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RG  KH KRL+AP HW+L K+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RT
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 94/144 (65.28%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RG  KH KRL+AP HW+L K+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RT
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 94/144 (65.28%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RG  KH KRL+AP HW+L K+ G +APK S GPHK R+CLPL++ IRNRLKYAL  REV +I+MQR ++VDGKVRTD TYPAGFMDV+S+ KT E+FRL+YDTKGRF +H I+ EEA++KLCKV+ +Q G+ GIP+L T+D RT
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
[Close]
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 1.007e-51
Identity = 96/144 (66.67%), Postives = 118/144 (81.94%), Query Frame = 2 
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP+HW+L K+SG +AP+ S GPHKLR+CLPLI+ +RNRLKYAL  +EV  I+MQRLVKVDGKVRTD  YPAGFMDVIS+EKT E+FRL++D KGRFT+ RI  EEA++KL +V RV+ G  GIP++ T D RT
Sbjct:    3 RGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRT 146
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_LYSTE7.198e-5870.1440S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_CANAL7.198e-5875.0040S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_SPOFR1.603e-5771.5340S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_IXOSC2.094e-5770.8340S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4Y2_HUMAN2.094e-5770.8340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_BOMMO6.093e-5770.1440S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS43_ARATH5.902e-5265.2840S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH5.902e-5265.2840S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH5.902e-5265.2840S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_DICDI1.007e-5166.6740S ribosomal protein S4 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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