FC930960
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20 Identity = 58/139 (41.73%), Postives = 77/139 (55.40%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H +R AP+ W + K G + + SPGPH L LPL + IR+ LKYA E + I+ + VKVDG VR D +P G MDVI + TGE +R+V D + + I EEA KL +V+ + KGG L HD R Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 G +H K ++AP +W + + + K+SPGPH + LPL++ +R+ L YA G+E + ++ + K+DG+VR D +P G MDVI + +++R++ + I EEA +KLC+++ K G L HD R Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGR 146
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19 Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H +R ++P W + K G +A + SPGPH L +PL + IR+ L+YA RE + I+ + +KVDG VR + +P G MDV+ + TGE +R+V D + + + I +EEA+ KL +V+ KGG + HD R Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGR 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19 Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 2 Query: 38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 G + K L+AP W + + +A K PGPH LPL++ +RN L YA RE + ++ + +VDG VR D +P GFMDVI + TGE FR++ F +H I EE + K +++ KGG L HD R Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19 Identity = 52/128 (40.62%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433 HQKRLS P W GK + PGPH LPL + IR+ LK N RE K I+ + V VDG R D +P G DVI+L E +R+ D KGR +H++ A KLC++ KGG Sbjct: 3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGG 129
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19 Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H +R ++P W + + ++ K SPGPH +PL V +R+ YA RE + I+ + VKVDGKVR D YP G MDVI L E++R++ D RI EA K+C+++ + K G L HD R Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19 Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 G +H K L+AP ++ + K + K SPGPH + + +PL++ +R+ LK A RE + I+ + + VDGK R D + G MDVIS+ + G ++R+V D + I E++ KL KV + +GG L +HD R Sbjct: 5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGR 146
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18 Identity = 48/128 (37.50%), Postives = 77/128 (60.16%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433 HQKRLSAP + + + + K SPGPH ++ +PL+V +R+ L+ A GRE + I+ + VDG VR D +P G DV+++ K + +R+++D KGR+ + E+A+ KL K+ L +GG Sbjct: 5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGG 129
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18 Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433 HQKRLS P W +G+ + PGPH LPL + IR+ LK N RE K I+ + V VDG R D +P G DVI+L E +R++ D KGR ++++ E KLC++ KGG Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGG 129
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18 Identity = 55/139 (39.57%), Postives = 74/139 (53.24%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H +R AP W + K G + K SPGPH LPL + IR+ L+YA RE + I+ + +KVDG VR D +P G MDVI + TGE +R+V D + + I + EA KL +V+ GG L HD R Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGR 141 The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bpback to top |