FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 58/139 (41.73%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H +R  AP+ W +  K  G +  + SPGPH L   LPL + IR+ LKYA    E + I+ +  VKVDG VR D  +P G MDVI +  TGE +R+V D    + +  I  EEA  KL +V+   + KGG   L  HD R
Sbjct:    3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 47/142 (33.10%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            G  +H K ++AP +W + +    +  K+SPGPH +   LPL++ +R+ L YA  G+E + ++ +   K+DG+VR D  +P G MDVI +    +++R++        +  I  EEA +KLC+++     K G   L  HD R
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGR 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H +R ++P  W +  K  G +A + SPGPH L   +PL + IR+ L+YA   RE + I+ +  +KVDG VR +  +P G MDV+ +  TGE +R+V D +  + +  I +EEA+ KL +V+     KGG   +  HD R
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGR 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 2
Query:   38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            G  +  K L+AP  W + +    +A K  PGPH     LPL++ +RN L YA   RE + ++ +   +VDG VR D  +P GFMDVI +  TGE FR++      F +H I  EE + K  +++     KGG   L  HD R
Sbjct:    5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 52/128 (40.62%), Postives = 66/128 (51.56%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433
            HQKRLS P  W  GK    +     PGPH     LPL + IR+ LK   N RE K I+ +  V VDG  R D  +P G  DVI+L    E +R+  D KGR  +H++ A     KLC++      KGG
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGG 129          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H +R ++P  W + +    ++ K SPGPH     +PL V +R+   YA   RE + I+ +  VKVDGKVR D  YP G MDVI L    E++R++ D        RI   EA  K+C+++   + K G   L  HD R
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   38 GPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            G  +H K L+AP ++ + K    +  K SPGPH + + +PL++ +R+ LK A   RE + I+  + + VDGK R D  +  G MDVIS+ + G ++R+V D      +  I   E++ KL KV   +  +GG   L +HD R
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGR 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 48/128 (37.50%), Postives = 77/128 (60.16%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433
            HQKRLSAP  + + +    +  K SPGPH  ++ +PL+V +R+ L+ A  GRE + I+    + VDG VR D  +P G  DV+++ K  + +R+++D KGR+    +  E+A+ KL K+    L +GG
Sbjct:    5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGG 129          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433
            HQKRLS P  W +G+    +     PGPH     LPL + IR+ LK   N RE K I+ +  V VDG  R D  +P G  DVI+L    E +R++ D KGR  ++++  E    KLC++      KGG
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGG 129          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 55/139 (39.57%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H +R  AP  W +  K  G +  K SPGPH     LPL + IR+ L+YA   RE + I+ +  +KVDG VR D  +P G MDVI +  TGE +R+V D    + +  I + EA  KL +V+      GG   L  HD R
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGR 141          
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PYRAE3.492e-2041.7330S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]
RS4E_DESK14.561e-2033.1030S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_THENV1.733e-1938.1330S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_AERPE2.264e-1937.3230S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_METBF2.956e-1940.6330S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_CALMQ2.956e-1936.9630S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_KORCO5.043e-1935.2130S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_ARCFU1.123e-1837.5030S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_METMA1.916e-1839.0630S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_PYRAR3.269e-1839.5730S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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