FC930960
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18 Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 2 Query: 44 GKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466 G H KR++AP W + + + + K PG H +PL+V +R+ LK A N E+K I+ + V VDGKVR D Y G D IS+ ++R+V G+F H + +A K+CK+ +GG L HD T Sbjct: 3 GNHLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTT 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16 Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H ++ AP W + K G +A + S GPH L LPL V +R+ L+YA RE + I+ + +KVDG VR D +P G MDV+ + TGE +R+V D + + I + EA K +V+ GG L HD R Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGR 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R AP L K + +A+PGPHKL + +PL + +++ L A RE K ++++ + VDG+VR D +P G MDVIS+ + +FR+V D +I E+A+YK ++ K G L D R Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16 Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R P ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D + +I A+EA YK ++ KGG L D R Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16 Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 2 Query: 44 GKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433 G H KR+ +P W + + + + K SPGPH ++ LP++V+ R+++ N +E K ++ +R + V+G+ G D++S+ K+G+H+R++ D KGR I + A +L K+ + KGG Sbjct: 2 GHHLKRVVSPKSWGIPRKTDKFVTKTSPGPHN-KNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGG 130 The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bpback to top |