FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   44 GKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            G H KR++AP  W + + +  +  K  PG H     +PL+V +R+ LK A N  E+K I+ +  V VDGKVR D  Y  G  D IS+     ++R+V    G+F  H +   +A  K+CK+      +GG   L  HD  T
Sbjct:    3 GNHLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTT 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLG-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H ++  AP  W +  K  G +A + S GPH L   LPL V +R+ L+YA   RE + I+ +  +KVDG VR D  +P G MDV+ +  TGE +R+V D    + +  I + EA  K  +V+      GG   L  HD R
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGR 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R  AP    L K    +  +A+PGPHKL + +PL + +++ L  A   RE K ++++  + VDG+VR D  +P G MDVIS+  +  +FR+V D        +I  E+A+YK  ++      K G   L   D R
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R   P   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D      + +I A+EA YK  ++      KGG   L   D R
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   44 GKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGG 433
            G H KR+ +P  W + + +  +  K SPGPH  ++ LP++V+ R+++    N +E K ++ +R + V+G+         G  D++S+ K+G+H+R++ D KGR     I  + A  +L K+    + KGG
Sbjct:    2 GHHLKRVVSPKSWGIPRKTDKFVTKTSPGPHN-KNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGG 130          
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_UNCMA7.281e-1835.4630S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_PYRCJ1.373e-1637.4130S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_SULTO3.995e-1634.0630S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_SULIY3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA3.995e-1634.7830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_METHJ5.218e-1630.7730S ribosomal protein S4e OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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