FC930960
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15 Identity = 47/142 (33.10%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 47 KHQKRLSAPSHWLLGKMS-GTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCK-VKRVQLGKGGIPFLVTHDART 466 +H + L+ P W + + S G + K SPGPH +P+ V++R+ L A N REV+ ++ V VDG+ D +P G DV+++ + E++R++ D +G+ + +I EEA K K +++V + G I + +T D RT Sbjct: 7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15 Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKV 406 H R AP ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D +I A+EA YK ++ Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRI 121
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14 Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H R AP +GK + ++ GPHK+++ +PL + ++ LK RE K I+ V VDGKVR D YP G MDV+ + R++ D T I E+A+YK ++ K G+ L D R Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14 Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 H RL AP K + +ASPGPH L +PL + +R+ L + + +E K I+ V VDG+VR D YP G MDVI++ + R+V D +I EE+++KL ++ L KGG+ D R Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGR 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14 Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466 HQKRLS P+ W + + + T+ KA GPH +PL++ +R+ L YA N +E + + + V ++GK +D P G D+++ + E++R+ GR + I + A+ KL K+ GG L HD T Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGET 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14 Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 47 KHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHD 457 +HQKRL+ P+ W + + + T+ KA GPH +PL+V +R+ L Y + +E + + V V+G +D P G D+++ + GE FR+ D GR + + E A +L K+ + GG L HD Sbjct: 3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHD 138
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13 Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 2 Query: 56 KRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466 KRL + + + + P +PG H + L+ IR+ LK + RE I+ LVKVDGK + + GFMDVI E GE +R+VY+ +G + + E A KL KV+ + G L THD RT Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13 Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466 HQKRL+ P W + + Y KA+ GPH + +PL++ +R+ L Y + +E + + Q + ++G +D P G D+++ ++ E++R+ D GR ++ I + A KL K+ GG L HD T Sbjct: 4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGET 141
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12 Identity = 41/143 (28.67%), Postives = 68/143 (47.55%), Query Frame = 2 Query: 35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 +G KHQKR+S+ + K G + K S GPH + L+ I+ A N +E + ++ + V+GK +P MD IS +H+R++ G+ TV+ I E + K+CKV ++ ++T D R Sbjct: 3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12 Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 2 Query: 56 KRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463 KRL P + + + + P PG HK + L+ IR+ L+ + RE I+ LVKVDGKV + + GFMDVI E +GE +R+VY+ +G + + A K +VK + G L HD R Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGR 139 The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bpback to top |