FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 47/142 (33.10%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   47 KHQKRLSAPSHWLLGKMS-GTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCK-VKRVQLGKGGIPFLVTHDART 466
            +H + L+ P  W + + S G +  K SPGPH     +P+ V++R+ L  A N REV+ ++    V VDG+   D  +P G  DV+++ +  E++R++ D +G+  + +I  EEA  K  K +++V +  G I + +T D RT
Sbjct:    7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKV 406
            H  R  AP   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D        +I A+EA YK  ++
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRI 121          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  R  AP    +GK    +  ++  GPHK+++ +PL + ++  LK     RE K I+    V VDGKVR D  YP G MDV+ +       R++ D     T   I  E+A+YK  ++      K G+  L   D R
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            H  RL AP      K    +  +ASPGPH L   +PL + +R+ L +  + +E K I+    V VDG+VR D  YP G MDVI++     + R+V D        +I  EE+++KL ++    L KGG+      D R
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGR 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            HQKRLS P+ W + + + T+  KA  GPH     +PL++ +R+ L YA N +E +  + +  V ++GK  +D   P G  D+++  +  E++R+     GR  +  I  + A+ KL K+       GG   L  HD  T
Sbjct:    4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGET 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 2
Query:   47 KHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHD 457
            +HQKRL+ P+ W + + + T+  KA  GPH     +PL+V +R+ L Y  + +E +  +    V V+G   +D   P G  D+++  + GE FR+  D  GR  +  +  E A  +L K+    +  GG   L  HD
Sbjct:    3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHD 138          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   56 KRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            KRL       + + +  + P  +PG H     + L+  IR+ LK +   RE   I+   LVKVDGK   +  +  GFMDVI  E  GE +R+VY+ +G   + +   E A  KL KV+   +  G    L THD RT
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   50 HQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            HQKRL+ P  W + +    Y  KA+ GPH   + +PL++ +R+ L Y  + +E +  + Q  + ++G   +D   P G  D+++ ++  E++R+  D  GR ++  I  + A  KL K+       GG   L  HD  T
Sbjct:    4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGET 141          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 41/143 (28.67%), Postives = 68/143 (47.55%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            +G  KHQKR+S+ +     K  G +  K S GPH     + L+  I+     A N +E + ++    + V+GK      +P   MD IS     +H+R++    G+ TV+ I   E + K+CKV ++         ++T D R
Sbjct:    3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 2
Query:   56 KRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR 463
            KRL  P    + + +  + P   PG HK    + L+  IR+ L+ +   RE   I+   LVKVDGKV  +  +  GFMDVI  E +GE +R+VY+ +G   +     + A  K  +VK   +  G    L  HD R
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGR 139          
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_NANEQ1.163e-1533.1030S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_SULSO9.841e-1536.1330S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULAC1.285e-1432.6130S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_METS51.285e-1434.7830S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_HALMA4.884e-1431.6530S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_HALLT6.379e-1431.3930S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4E_THEAC3.166e-1335.0430S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_NATPD4.135e-1329.5030S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4_BIGNA1.203e-1228.6740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_THEVO7.798e-1233.8230S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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