FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R  AP   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D        +I A+EA YK  ++      K G   L   D R I   +      K   T+K+++ + +ILD          +  GGRN+G  G++
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 59/191 (30.89%), Postives = 102/191 (53.40%), Query Frame = 3
Query:   51 KHQKRLSAPSHWLLDKMS-GTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCK-VKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            +H + L+ P  W + + S G +  K SPGPH     +P+ V++R+ L  A N REV+ ++    V VDG+   D  +P G  DV+++ +  E++R++ D +G+  + +I  EEA  K  K +++V +  G I + +T D RT    D + K +  V  +I   KI + +  +         G++ GR+GVI
Sbjct:    7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 61/197 (30.96%), Postives = 89/197 (45.18%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--------RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620
            H  R  AP    + K    +  ++  GPHK+++ +PL + ++  LK     RE K I+    V VDGKVR D  YP G MDV+ +       R++ D     T   I  E+A+YK  ++      K G+  L   D R I        +Y  P +    T+K+++   KI        GV  M  GGRN G  G I+
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKIS 196          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULSO2.956e-1931.9430S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_NANEQ3.861e-1930.8930S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_SULAC1.916e-1830.9630S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
back to top