FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19 Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R AP ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D +I A+EA YK ++ K G L D R I + K T+K+++ + +ILD + GGRN+G G++ Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19 Identity = 59/191 (30.89%), Postives = 102/191 (53.40%), Query Frame = 3 Query: 51 KHQKRLSAPSHWLLDKMS-GTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCK-VKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 +H + L+ P W + + S G + K SPGPH +P+ V++R+ L A N REV+ ++ V VDG+ D +P G DV+++ + E++R++ D +G+ + +I EEA K K +++V + G I + +T D RT D + K + V +I KI + + + G++ GR+GVI Sbjct: 7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18 Identity = 61/197 (30.96%), Postives = 89/197 (45.18%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI--------RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620 H R AP + K + ++ GPHK+++ +PL + ++ LK RE K I+ V VDGKVR D YP G MDV+ + R++ D T I E+A+YK ++ K G+ L D R I +Y P + T+K+++ KI GV M GGRN G G I+ Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKIS 196 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |