FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 325.479 bits (833), Expect = 1.756e-88 Identity = 150/211 (71.09%), Postives = 179/211 (84.83%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RGP KH KRL+AP W+LDK+ G +AP+ S GPHKLR+ LPL++F+RNRLKYALNG EV I+MQRLVKVDGKVRTD TYPAG+MDVI+LEKTGE FRLVYD KGRF +HRI AEEA+YKLCKVK+ QLG G+PFLVTHD RTIRYPDP I ND+V+VDIA+GKI D++KFDSG + M TGGRN+GRVG + +RERH G F+IVH++D+ Sbjct: 3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 1.138e-87 Identity = 149/211 (70.62%), Postives = 176/211 (83.41%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RGP KH KRL+AP W+LDK+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFTVHRI EEA+YKLCKVKRV G +PFLVTHD RTIRYPDP IKVND+V++DIAT KI+DF+KF+SG + M TGGRN+GRVG I RERH G F+IVH++D+ Sbjct: 3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87 Identity = 147/211 (69.67%), Postives = 177/211 (83.89%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RGP KH KRL+AP W+LDK+ G YAP+ S GPHKLR+ LPL++F+RNRLKYAL EV I+MQRL+KVDGKVRTD YP+GFMDVI++EKTGE FRL+YD KGRFT+HRI AEEA+YKLCKVKRVQ G GIPFLVTHD RTIRYPDP IKVNDT++++IA KI+D +KFDSG + M TGGRN+GRVG + +RERH G F+IVH++D+ Sbjct: 3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87 Identity = 149/215 (69.30%), Postives = 178/215 (82.79%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQ +K+DGKVR D TYPAGF+DVIS+EKTGEHFRLVY+TKG F VHRI EEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI F+KFD+G V M G N+GRVGVIT+RERH G ++VHV+DA NS Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNS 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 9.638e-87 Identity = 146/211 (69.19%), Postives = 176/211 (83.41%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RGP KH KRL+AP W+LDK+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFT+HRI EEA+YKLCKVKRV G +P+LVTHD RTIRYPDP IKVND++++DIAT KI+DF+KF+SG + M TGGRN+GRVG I RERH G F+IVH++D+ Sbjct: 3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 3.100e-85 Identity = 142/211 (67.30%), Postives = 174/211 (82.46%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RGP KH KRL+AP W+L K+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL EV I MQRL+KVDGKVRTD+ YP GFMDV+++EKTGE FRL+YD KGRF++HRI EEA+YKLCKV+RVQ G G+PFLVTHD RT+RYPDP IKVNDT++++IAT KILD +KFDSG + M TGGRN+GRVG + RERH G F+I H++D+ Sbjct: 3 RGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDS 213
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 4.190e-82 Identity = 138/194 (71.13%), Postives = 169/194 (87.11%), Query Frame = 3 Query: 90 LDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI EEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F++VHV+DA Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 301.597 bits (771), Expect = 2.716e-81 Identity = 141/212 (66.51%), Postives = 172/212 (81.13%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDAL 674 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ IRNRLKYAL REV +I+MQR V VDGKVRTD TYPAGFMDVIS+ KTGE++RL+YDTKGRF + ++ E+A++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ T KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F +HV DAL Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDAL 214
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 3.547e-81 Identity = 141/212 (66.51%), Postives = 172/212 (81.13%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDAL 674 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ IRNRLKYAL REV +I+MQR V VDGKVRTD TYPAGFMDVIS+ KT E++RL+YDTKGRF +H I+ E+A++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ T KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F +HV D+L Sbjct: 3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSL 214
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 3.003e-80 Identity = 139/211 (65.88%), Postives = 169/211 (80.09%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671 RG KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL REV AI+MQR V VDGKVRTD TYPAGFMDV+S+ KT E FRL+YDTKGRF +H I +E ++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F +HV+DA Sbjct: 3 RGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA 213 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |