FC930961

Overview
NameFC930961
Unique NameFC930961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.756e-88
Identity = 150/211 (71.09%), Postives = 179/211 (84.83%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RGP KH KRL+AP  W+LDK+ G +AP+ S GPHKLR+ LPL++F+RNRLKYALNG EV  I+MQRLVKVDGKVRTD TYPAG+MDVI+LEKTGE FRLVYD KGRF +HRI AEEA+YKLCKVK+ QLG  G+PFLVTHD RTIRYPDP I  ND+V+VDIA+GKI D++KFDSG + M TGGRN+GRVG + +RERH G F+IVH++D+
Sbjct:    3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.138e-87
Identity = 149/211 (70.62%), Postives = 176/211 (83.41%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RGP KH KRL+AP  W+LDK+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV  I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFTVHRI  EEA+YKLCKVKRV  G   +PFLVTHD RTIRYPDP IKVND+V++DIAT KI+DF+KF+SG + M TGGRN+GRVG I  RERH G F+IVH++D+
Sbjct:    3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87
Identity = 147/211 (69.67%), Postives = 177/211 (83.89%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RGP KH KRL+AP  W+LDK+ G YAP+ S GPHKLR+ LPL++F+RNRLKYAL   EV  I+MQRL+KVDGKVRTD  YP+GFMDVI++EKTGE FRL+YD KGRFT+HRI AEEA+YKLCKVKRVQ G  GIPFLVTHD RTIRYPDP IKVNDT++++IA  KI+D +KFDSG + M TGGRN+GRVG + +RERH G F+IVH++D+
Sbjct:    3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87
Identity = 149/215 (69.30%), Postives = 178/215 (82.79%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQ  +K+DGKVR D TYPAGF+DVIS+EKTGEHFRLVY+TKG F VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI  F+KFD+G V M   G N+GRVGVIT+RERH G  ++VHV+DA  NS
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNS 217          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.638e-87
Identity = 146/211 (69.19%), Postives = 176/211 (83.41%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RGP KH KRL+AP  W+LDK+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL G EV  I+ QRL+KVDGKVRTD TYPAGFMDV+S+EKT E FRL+YD KGRFT+HRI  EEA+YKLCKVKRV  G   +P+LVTHD RTIRYPDP IKVND++++DIAT KI+DF+KF+SG + M TGGRN+GRVG I  RERH G F+IVH++D+
Sbjct:    3 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.100e-85
Identity = 142/211 (67.30%), Postives = 174/211 (82.46%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RGP KH KRL+AP  W+L K+ G YAP+ S GPHKLR+CLPL++F+RNRLKYAL   EV  I MQRL+KVDGKVRTD+ YP GFMDV+++EKTGE FRL+YD KGRF++HRI  EEA+YKLCKV+RVQ G  G+PFLVTHD RT+RYPDP IKVNDT++++IAT KILD +KFDSG + M TGGRN+GRVG +  RERH G F+I H++D+
Sbjct:    3 RGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDS 213          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.190e-82
Identity = 138/194 (71.13%), Postives = 169/194 (87.11%), Query Frame = 3
Query:   90 LDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS++KTGE+FRL+YDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F++VHV+DA
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 2.716e-81
Identity = 141/212 (66.51%), Postives = 172/212 (81.13%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDAL 674
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ IRNRLKYAL  REV +I+MQR V VDGKVRTD TYPAGFMDVIS+ KTGE++RL+YDTKGRF +  ++ E+A++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ T KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F  +HV DAL
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDAL 214          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.547e-81
Identity = 141/212 (66.51%), Postives = 172/212 (81.13%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDAL 674
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ IRNRLKYAL  REV +I+MQR V VDGKVRTD TYPAGFMDVIS+ KT E++RL+YDTKGRF +H I+ E+A++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ T KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F  +HV D+L
Sbjct:    3 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSL 214          
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.003e-80
Identity = 139/211 (65.88%), Postives = 169/211 (80.09%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDA 671
            RG  KH KRL+AP HW+LDK+ G +APK S GPHK R+CLPLI+ +RNRLKYAL  REV AI+MQR V VDGKVRTD TYPAGFMDV+S+ KT E FRL+YDTKGRF +H I  +E ++KLCKV+ VQ G+ GIP+L T+D RTIRYPDP IK NDT+K+D+ + KI+DF+KFD G V+M TGGRN GRVGVI +RE+H G F  +HV+DA
Sbjct:    3 RGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDA 213          
The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_DROME1.756e-8871.0940S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_SPOFR1.138e-8770.6240S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_CARGR4.326e-8769.6740S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y2_HUMAN4.326e-8769.3040S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_BOMMO9.638e-8769.1940S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_LYSTE3.100e-8567.3040S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_HORSE4.190e-8271.1340S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ORYSJ2.716e-8166.5140S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_MAIZE3.547e-8166.5140S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4_GOSHI3.003e-8065.8840S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110H07EF PostHarvP1 Citrus clementina cDNA clone C34110H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCCGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCAAC
ATCGTCCACGTTCGCGATGCTCTGGACAACAGTTCGCTCCCGTGAGTCCA
CGTCTTCGTCATG
back to top